Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0085 ATGGGAGTTGAAAAAGAAGGGACGAAAGGTGGAGGAGGTTATGTTGGTGGTTTTTTCCAGTTGTTTGACTGGACGTCGAAGTCCCGTAAGAAATTATTTTCGGCCAAGCCAGATTTGCCTGAGACTTTAAAACAGGGAAGAAGAGTCGATTACAATGTGGCAATGCCAATGACACAGTCCTCCTATCTGGTTGATGAAGATGAAAGTGGTGTTGGGGCAAGTCTAAGAGGAAGTTGTGATCATAGTTATGCTTCATCTGTTACAGATGATGAAACATTTGGTACAAGGGCTCCTAGTGTTGTTGCCAGGCTTATGGGATTAGATTCCTTGCCTTCTTCAAGTTTTGCTGATCCTTATGCTACCCCATATTTTGATACCCGGTCCCTTCAAGATGCTCAGTACTTCAAGAAAAATTTTGGTCACCAGCATGACCATCAGACCCCATGTTCTGGAAAGCTGGTTGAAAAGGTTGCGGGCTCATCTAGGAGCTTCATTGAGCCAAAGCCGCAAAAGGCCATTACCAGGCCAATTGAAAAGTTCCAAACAGAAGTGTTGCCTCCAAAATCAGCTAAATCAATTCCTGTTACACACCATAAACTTTTGTCCCCCATCAAGAGTCCCAGCTTTGTTCCCACCAATAATGCTGCATATATAATGGAGGCTGCGGCAAGAATTATTGAGCCTGGTTCCCAAGCTAGTACCAGGGCTAAGACACCTTCGGTAGCTTCATCAGCACCACTGAGAGTGAGAGAACTAAAAGATAAGGTGGAGGCTTCACAAAAGGGACCTCTAATTGGGCCATCCTCCATGACCTCTAGAACTCGAGATCTAAAAGAGAAAAGGGAACTTCCTCAAAGAACGGCCAGGCTTTCCGTATCTTGTCAAAGATCGGTCGAGTCAAATGCTGCCAAGTATCTCAAAGGACAATCTTTGAACAGAAGCTGGAATGGATCTGTGGATATGTCCATCAAATCTCCTACACACGAGGAAGAAGTTTCTTCTTTGAAGAATAATAAGGGGAAGTCCATTTCGCTTGCAATCCAAGCAAAAGTGAATGTTCAAAGAAGGGAAGGTTTGAGTGCGACTGGTGGAAGAAGTATGACGACCCAGAAAGAGAATCCTGACTTGAAATCCAACCAACCAATGAAAGGAAGCGTGCAGAAAAATTTTCACAAGAAATCTTCTACTCAGAATTCATCTGGTGCTCTCAGACAGAATAATCTGAAACAGAATTATTCTACTGACAAAGACAAATTACCATCAAAGCCATTGACGACCAATTCCCACAGTAGAAAAGTTCTGACTGGGGATTCCCCTTACGGACGTCATAGAAGCTCCAGTAATAAATCCATTGCAAAATCTAAAGTTGGATCCAGAAAGTCAGCTATGGAGGTGACTGATAGTGAAAAGGAAGTTTTATACACCAGCACAAACAATTTTCCTAGAAAGAAAAGGTCTACAGACAAGGACTGGAATGATAGGGTTGTGGACAATTTGTTCATTGAAAAAACTCAAAACACTGCTAAGTCTAACCTAGTGAGTAATAAACAAAATAGTTGGGCTGAAGATGTAAAAAAGAAAGACATGGATGTAGTTTCATTCACATTCACCACACCATTAACTAGGAGCAATCCAGGTTTTGAGACATCTGGACAAGCTGCCCAAAATACTAATGGTCTTTCCCTGGATCAACGCATTAAAAGGGTGTTGCTTGACCCAGACAGTACAAAGTCCCCAATAGGATACAATTTGATTGGTGGTGGTGATGCCTTGGGTGTCCTTTTGGAACAGAAATTGAGAGAATTGACATGTATGGAAACAATTTGTCATGACTCTTCTAAAGTGAGGCAGCCTGCCATTACTCCTTCTGTATCAGATGATCAAGTAACCGGATTGAATGTAGTTAACCTCAATCCAAGGTTCCAACAGAAAAAAGACCAAGATGTATTCTTTACAGGCAAGTTAAGCAACAACTATGATTCAGACATCTCCTTCAGGGGTCTTCCTGAATTATCATTCAAGCAGAACTCATGGATTGATGAGATGGAACCACAGTTACTCAATTGCAGACACCCAAGTCCAATCTCTGTTCTCGAGCCTTCTTTTTCAATTGAAAGTTGTGAATCTTCATTGAGCACAGATGTTACTAGTACAGAAGGAAGCAAGTTGTGGTCATCTGTTCAAGCTCAAGAAGTTCAAGGCTTGAATTTTTCGAGGAAGTTCTATGCTTGTGAAACTGATGCTGAGTTATCCGATTCTGCTTCTTCAACCTCAGCTGGGAACATGATGAAACACACAAGTACGGTCACAAGGTTTGGTAGTAGCTCAAGGACGTGGGAGTTGGATTATGTGAAAGATATATTGAGTAATGTTGAGTTGATGTATATGGATTTTTCCCTTGGCCAAGCTAGTGAGGTTATAAACTCTCATCTATTCAAACAGTTGGAAGGCCGGAAGGGAGGGTTTAAGTGTGATGAGGAGTCTAGGATAAGAAGGAAAGTTACATTTGATTGTGTGAGTGAATGTTTGGACTTGAGATGCAGGCGTTATGTAGGTGGAGGATTCAAAATGTGGACCAAGGGGCTTGAAATGGTGAAAAGAAAAGAATGGTTGGCAGAAGATGTGTACAAGGAGATCTCATGTTGGAGAGGAATGGGAGACTCAATGGTGGATGAGCTTGTGGACAAGGACATGAGCAGCCAGTATGGAAGATGGCTAGATTATGAGGTTGATGCCTCTGAACTCGGATCAGAGGTTGTGGACCAAATATTTAATTCTTTGGTTGATGATGTTGTCTCTGAAATCTTGCAATTGTAA 2817 0.4192 MGVEKEGTKGGGGYVGGFFQLFDWTSKSRKKLFSAKPDLPETLKQGRRVDYNVAMPMTQSSYLVDEDESGVGASLRGSCDHSYASSVTDDETFGTRAPSVVARLMGLDSLPSSSFADPYATPYFDTRSLQDAQYFKKNFGHQHDHQTPCSGKLVEKVAGSSRSFIEPKPQKAITRPIEKFQTEVLPPKSAKSIPVTHHKLLSPIKSPSFVPTNNAAYIMEAAARIIEPGSQASTRAKTPSVASSAPLRVRELKDKVEASQKGPLIGPSSMTSRTRDLKEKRELPQRTARLSVSCQRSVESNAAKYLKGQSLNRSWNGSVDMSIKSPTHEEEVSSLKNNKGKSISLAIQAKVNVQRREGLSATGGRSMTTQKENPDLKSNQPMKGSVQKNFHKKSSTQNSSGALRQNNLKQNYSTDKDKLPSKPLTTNSHSRKVLTGDSPYGRHRSSSNKSIAKSKVGSRKSAMEVTDSEKEVLYTSTNNFPRKKRSTDKDWNDRVVDNLFIEKTQNTAKSNLVSNKQNSWAEDVKKKDMDVVSFTFTTPLTRSNPGFETSGQAAQNTNGLSLDQRIKRVLLDPDSTKSPIGYNLIGGGDALGVLLEQKLRELTCMETICHDSSKVRQPAITPSVSDDQVTGLNVVNLNPRFQQKKDQDVFFTGKLSNNYDSDISFRGLPELSFKQNSWIDEMEPQLLNCRHPSPISVLEPSFSIESCESSLSTDVTSTEGSKLWSSVQAQEVQGLNFSRKFYACETDAELSDSASSTSAGNMMKHTSTVTRFGSSSRTWELDYVKDILSNVELMYMDFSLGQASEVINSHLFKQLEGRKGGFKCDEESRIRRKVTFDCVSECLDLRCRRYVGGGFKMWTKGLEMVKRKEWLAEDVYKEISCWRGMGDSMVDELVDKDMSSQYGRWLDYEVDASELGSEVVDQIFNSLVDDVVSEILQL* 939
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0085 938 MobiDBLite consensus disorder prediction 254 294 - -
Vra5g0085 938 Pfam DUF761-associated sequence motif 85 115 IPR032795 -
Vra5g0085 938 MobiDBLite consensus disorder prediction 359 455 - -
Vra5g0085 938 PANTHER PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT P DOWN SYNDROME CRITICAL REGION PROTEIN 5 -RELATED 1 936 - -
Vra5g0085 938 Pfam Domain of unknown function (DUF4378) 780 930 IPR025486 -
Vra5g0085 938 PANTHER EXPRESSED PROTEIN 1 936 - -
Vra5g0085 938 MobiDBLite consensus disorder prediction 356 467 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0085 Vra-Chr5 688054 693195 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0085 16 936 TRM (TON1 Recruiting Motif) Superfamily AT3G58650 30.159 1.63e-90 304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0085 - - gmx:102669513 1541.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0085 5 688054 693195 Vra5g0085 5 688054 693195 ECH
Vra7g2794 7 48190672 48195815 Vra5g0085 5 688054 693195 PCT