Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0080 ATGGCACACGACTTAACGGGGCAGCTTGTGGGTTCAGAGATACATGGGTTTCACACCTTGCAGGATCTGGATGTTAGTAATACTATGGAGGAAGCAAAAAGCAGATGGCTTCGTCCAAATGAGATACATGCCATACTCTGTAATTACAAATATTTCAAGATCAAGGCCAAGCCAGTGCATTTGCCCGAAAGTGGTACTATTGTACTATTTGACCGCAAGATGCTTAGAAATTTCAGAAAAGATGGGCACAATTGGAAAAAGAAAAGCGATGGGAAAACTGTTAAAGAAGCTCATGAACACTTAAAAGTTGGCAATGAAGAAAGGATCCATGTATACTATGCACATGGCCAAGATAACTCGACCTTTGTCCGTAGATGTTATTGGTTGCTTGATAAGAATTTGGAGCACATAGTCCTTGTTCATTATCGTGAAACACGAGAGATACAATTGCAAAGTTCTCCTGTTACACCTGTAAATTCAAATTCAAGTTCTGTCTCTGACCCAGCTGCATCTTGGATTCTAGCAGAAGACTTAGATTCTGGGGCGAAAAGTGCTCACAGTGCTGAGCTTAATGACAATTTAACAATTAAAAGTTATGAAGAGAAGCTTCATGAGATTAATACACTTGAATGGGATGACCTAGTTGTTTCAAATGTCAACACTTCTACTACATCTAATGGAGGCAATGTTCCACATTCATATCAACAAAATCAAAGTTTACTTAGTGGAAGCTTTGACAATGTATCTGTTACTCCTTTGGCAGAAGTTCCTCCTTTAGGCTTGCAAAGTCAGGACAGCTTTGGAACGTGGATGAACAACATCATAACAGATACACCATGTTCCGTAGACGAGTCAGCTCTCGAAACATCAATTTCTATTGTTCGTGAACCATATTCATCACTGGTGGCAGATAATCAGCTATCTTCTTTGCCTGAACAAGTATTTAATCTCACAGAGGTGTCCCCTGCTTGGGCATCTTCCACTGAGAAAACAAAGGTCCTGATAACTGGATATTTTCATAGTAACTATCAACACCTTGCAAAGTTCAACCTAGTGTGTGTCTGTGGTGATGTAAGTTTTCCTGTAGAAATTGTTCAGGTCGGGGTTTACCGATGCTGGGTGCCACCACACTCCCCTGGATTGGTCAATATCTATTTGAGCTTTGATGGCCACAAGCCCATTAGCCATGTTGTTAATTTTGAGTATCGTACTCCCATTTTGCATGATCCAACTGCTACAATGGAAGAGAAATACAACTGGAATGAATTTCGACTTCAGATGAGGCTTGCTCATTTGCTCTTTTCTACCGACAAGATCCTTGATATTTTCTCAAATACAGTATCACCAAATGCTTTGAAAGAGGCTAGCAGATTTTCCTTCAGAACATCATTTATCTCCAAAAGCTGGCAATTCTTGATGAAGTCAATTGACGAGCAAACAACTCCATTTCCACAAGTAAAAGATAGCTTGTTTGAAATTGCATTGAAAAACAAATTAAAGGAGTGGCTTTTAGAACGAATTGTTGTAGGCAGCAAGAGTACTGAATATGATGCACAAGGGCAAGGTGTACTTCATTTGTGTGCAATGCTTGGATATAGTTGGGCAATCTCCTTATTTTCTTGGTCAGGCTTGTCACTAGATTTCCGTGACAAATTTGGATGGACAGCTCTTCATTGGGCAGCTTATTATGGAATGGAGAAAATGGTTGCAACTCTGCTGTCTGCTGGGGCAAGGCCAAACCTGGTCACAGATCCTACTCCGAAAAATCCTGGTGGGTTTACTGCTGCTGATCTTGCTTATATGAAGGGCTATGATGGCTTAGCTGCTTACCTTTCCGAAAAGTCTCTGGTTGAGCAGTTCAATGACATGAGCTTGGCTGGAAATATCAGTGGCACACTGGACACTAGCTCAACTGATGTAGTAAACGCTCAAGAACTTACTGAGGACCAGCTCTACTTAAAGGAGACATTGGCAGCTTACCGTACCGCTGCTGGGGCAGCGGCACGCATTCAAGCTGCATATAAGGAGCATGAGCTAAATCTACGATACAAGGCTGTTGAATTAAACACCCCAGAGCATCAAGCACGTCGTATAGTAGCGGCAATGAAGATTCAACATGCCTTTCGCAAGTATGAGACAAGGAAATCAAATGCAGCTGCTGTTCGAATTCAGCTTAGATTCCGGACACGGAAAATCCGTAGAGAATTTCTTAATATGCGGCGTCAGGCTATTAAAATCCAAGCTGCTTTCAGGGGCTTTCAAGTCCGGAGGCAATATAAAAAGATCATATGGTCTGTTGGGGTGTTAGAGAAAGCAATTCTGCGCTGGCGGTTAAAGAGAAAAGGCTTCCGTGGTCTCCAGGTTAATTCTGTTGAGGATGGAGAGCAGGAAGACGGTGTAGAGGAGGAGTTCTTTAGGACTGGCCTCAAACAAGCCGAAGAACGTGTCGAGAGGTCGGTCGTACGTGTGCAGGCCATGTTCCGGTCTAAGAAAGCACAAGAAGAATACAGAAGAATGAAGCTAGCATATAGTCAAGCAAAGCTGGATCTGGAATTTGAAGATTTCCTCAGTTCTGAAGTTGACATGTTAACTGACATATAG 2601 0.4214 MAHDLTGQLVGSEIHGFHTLQDLDVSNTMEEAKSRWLRPNEIHAILCNYKYFKIKAKPVHLPESGTIVLFDRKMLRNFRKDGHNWKKKSDGKTVKEAHEHLKVGNEERIHVYYAHGQDNSTFVRRCYWLLDKNLEHIVLVHYRETREIQLQSSPVTPVNSNSSSVSDPAASWILAEDLDSGAKSAHSAELNDNLTIKSYEEKLHEINTLEWDDLVVSNVNTSTTSNGGNVPHSYQQNQSLLSGSFDNVSVTPLAEVPPLGLQSQDSFGTWMNNIITDTPCSVDESALETSISIVREPYSSLVADNQLSSLPEQVFNLTEVSPAWASSTEKTKVLITGYFHSNYQHLAKFNLVCVCGDVSFPVEIVQVGVYRCWVPPHSPGLVNIYLSFDGHKPISHVVNFEYRTPILHDPTATMEEKYNWNEFRLQMRLAHLLFSTDKILDIFSNTVSPNALKEASRFSFRTSFISKSWQFLMKSIDEQTTPFPQVKDSLFEIALKNKLKEWLLERIVVGSKSTEYDAQGQGVLHLCAMLGYSWAISLFSWSGLSLDFRDKFGWTALHWAAYYGMEKMVATLLSAGARPNLVTDPTPKNPGGFTAADLAYMKGYDGLAAYLSEKSLVEQFNDMSLAGNISGTLDTSSTDVVNAQELTEDQLYLKETLAAYRTAAGAAARIQAAYKEHELNLRYKAVELNTPEHQARRIVAAMKIQHAFRKYETRKSNAAAVRIQLRFRTRKIRREFLNMRRQAIKIQAAFRGFQVRRQYKKIIWSVGVLEKAILRWRLKRKGFRGLQVNSVEDGEQEDGVEEEFFRTGLKQAEERVERSVVRVQAMFRSKKAQEEYRRMKLAYSQAKLDLEFEDFLSSEVDMLTDI* 867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0080 866 Gene3D Immunoglobulins 311 406 IPR013783 -
Vra5g0080 866 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 682 842 IPR027417 -
Vra5g0080 866 Coils Coil 829 849 - -
Vra5g0080 866 Pfam CG-1 domain 31 144 IPR005559 GO:0003677
Vra5g0080 866 ProSiteProfiles Ankyrin repeat profile. 552 584 IPR002110 GO:0005515
Vra5g0080 866 Gene3D - 715 763 - -
Vra5g0080 866 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 261 862 - -
Vra5g0080 866 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 15 258 - -
Vra5g0080 866 SMART CG_1_2 29 146 IPR005559 GO:0003677
Vra5g0080 866 Pfam IQ calmodulin-binding motif 741 760 IPR000048 GO:0005515
Vra5g0080 866 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 261 862 - -
Vra5g0080 866 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 15 258 - -
Vra5g0080 866 ProSiteProfiles Ankyrin repeat region circular profile. 552 580 - -
Vra5g0080 866 ProSiteProfiles IQ motif profile. 817 845 IPR000048 GO:0005515
Vra5g0080 866 ProSiteProfiles IQ motif profile. 739 763 IPR000048 GO:0005515
Vra5g0080 866 Gene3D - 480 621 IPR036770 -
Vra5g0080 866 SUPERFAMILY Ankyrin repeat 493 614 IPR036770 -
Vra5g0080 866 SMART iq_5 738 760 IPR000048 GO:0005515
Vra5g0080 866 SMART iq_5 815 837 IPR000048 GO:0005515
Vra5g0080 866 SMART iq_5 715 737 IPR000048 GO:0005515
Vra5g0080 866 Pfam Ankyrin repeats (3 copies) 494 581 IPR002110 GO:0005515
Vra5g0080 866 ProSiteProfiles IQ motif profile. 716 745 IPR000048 GO:0005515
Vra5g0080 866 SUPERFAMILY E set domains 316 403 IPR014756 -
Vra5g0080 866 ProSiteProfiles CG-1 DNA-binding domain profile. 25 151 IPR005559 GO:0003677
Vra5g0080 866 SMART ANK_2a 552 581 IPR002110 GO:0005515
Vra5g0080 866 SMART ANK_2a 591 622 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0080 Vra-Chr5 622432 638977 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0080 29 849 CAMTA Transcription Factor Family AT3G16940 55.957 0.0 929
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Vra5g0080 Ank_2 3.9e-07 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0080 K21596 - gmx:100819198 1350.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0080 5 622432 638977 Vra5g0080 5 622432 638977 ECH
Vra7g2790 7 48144089 48152535 Vra5g0080 5 622432 638977 PCT