Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0062 ATGAGTTTGAAGGTTGGGAAATACGAGCTGGGAAAAACCATTGGAGAAGGAAGCTTTGCGAAGGTGAAGTTCGCCAGAGATGTCAACAACGGCAACAACGTTGCCATCAAAATCCTCGACCGCAAACATGTCCTCCGCCACAACATGATGGAACAGCTGCAGCGAGAAATATCCACCATGAGACTCATCAATCACCCAAATGTTACTAAAATATTTGAGGTGATGGCGAGCAAAACAAAGATTTACATTGTTCTGGAGTTAGTTGATGGAGGAGAGCTATTTGACAAGATAGCTGCAAAGGGGAAACTTGAAGAAGATGAAGCTAGAAATTATTTCCAACAACTTATTAATGCTGTTGACTACTGCCATAGTAGAGGCGTGTATCACAGAGATTTGAAGCCTGAGAATCTTCTTCTGGACTCGAATAGCGTTCTTAAAGTTTCAGATTTTGGATTGAGTACGTACACGCAGAAAGAGGATGAACTGCTCCGCACAGCATGTGGAACCCCAAATTATGTTGCTCCTGAGGTGATTCATAATAAAGGCTATGTTGGTTCTACATCTGACATATGGTCTTGCGGAGTCATTCTCTTTGTACTTATGGCTGGGTTCATGCCTTTTGATGCTCCAACTCATATGGCTCTGTTCAAGAAAATTATCAAGGCAGAATTCACTTGTCCATCATGGTTTCCACCACAGGCAAAGACACTGCTGAAACGCATTCTAGACCCAAATCCTCAAACGAGGATAAAAATTCCCGAGCTCTTAAAAGACGAGTGGTTCAAGAAAGGATACAAGCCAACATCTTTTACTGAGGAAGAGGACCTAAGCATGGATGATGTAGCCTTCGCTTTCAACGAGTCTGATAAAAATCTAGTGACAGAAAGAAAAGTGAAACCCGTCTACATGAATGCTTTTGAGCTCATTTCTAGGTCCCAAAGTTTCAATCTTGACAGTTTGTTCGAGATGCAAACGGATGAAGTAAAGCAAGAAACCTGTTTTACTTCACAGTGCCCTGCAATTGAAATTATGCACAAAATTGAAGAAGCAGCTAAGCCGCTGGGATTTAATGTACAAATCCAAAATTATAAGATGAAGCTGCAAGGTGACCAGAACGGAAGGAAGGGTCACCTTTCAATGGCTACTGAGGTTTTTGAAGTGGCTCCCTCAGTGCACATGGTGGAGCTGCGAAAGACAGGGGGTGATACACTTGAGTTTCATAAGTTCTACAAAATCTTCTCATCAGGGTTACAAGACATTCTGTGGCATACAGAAGAAAAAAAATGA 1287 0.4196 MSLKVGKYELGKTIGEGSFAKVKFARDVNNGNNVAIKILDRKHVLRHNMMEQLQREISTMRLINHPNVTKIFEVMASKTKIYIVLELVDGGELFDKIAAKGKLEEDEARNYFQQLINAVDYCHSRGVYHRDLKPENLLLDSNSVLKVSDFGLSTYTQKEDELLRTACGTPNYVAPEVIHNKGYVGSTSDIWSCGVILFVLMAGFMPFDAPTHMALFKKIIKAEFTCPSWFPPQAKTLLKRILDPNPQTRIKIPELLKDEWFKKGYKPTSFTEEEDLSMDDVAFAFNESDKNLVTERKVKPVYMNAFELISRSQSFNLDSLFEMQTDEVKQETCFTSQCPAIEIMHKIEEAAKPLGFNVQIQNYKMKLQGDQNGRKGHLSMATEVFEVAPSVHMVELRKTGGDTLEFHKFYKIFSSGLQDILWHTEEKK* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0062 428 Gene3D Kinase associated domain 1, KA1 297 423 - -
Vra5g0062 428 PANTHER - 4 425 - -
Vra5g0062 428 SMART serkin_6 8 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g0062 428 ProSitePatterns Serine/Threonine protein kinases active-site signature. 127 139 IPR008271 GO:0004672|GO:0006468
Vra5g0062 428 Gene3D Transferase(Phosphotransferase) domain 1 88 288 - -
Vra5g0062 428 ProSitePatterns Protein kinases ATP-binding region signature. 14 37 IPR017441 GO:0005524
Vra5g0062 428 Gene3D Phosphorylase Kinase; domain 1 1 87 - -
Vra5g0062 428 SUPERFAMILY Protein kinase-like (PK-like) 5 282 IPR011009 -
Vra5g0062 428 CDD CIPK_C 304 411 - -
Vra5g0062 428 Pfam Protein kinase domain 8 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g0062 428 Pfam NAF domain 300 359 IPR004041 GO:0007165
Vra5g0062 428 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 3 4 425 - -
Vra5g0062 428 ProSiteProfiles Protein kinase domain profile. 8 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g0062 428 ProSiteProfiles NAF domain profile. 298 322 IPR018451 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0062 Vra-Chr5 481131 485312 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0062 4 425 CBL-interacting serine-threonine protein kinases AT1G01140 69.464 0.0 627
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vra5g0062 Pkinase 9e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0062 - - var:108322331 810.831