Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0059 ATGTCAGAAGGTGCAGAAATTGACGAGCGAGTGGACCTTGATGAAGAAAATTTCATGGAAGAGATCGATGATGATGTCGAAGAACAAATAGATGACGATGGAGTGGATGGAGGTGAAGATGAAAACGCTGAAGGTAGTGTTGAGGAACATGAATACGAGGACTCAACAGCAGAGGTTGGTGGGAAGGACCAATTACCTGAAGCTGAAAAAAGTGACATTGCCACTGAATTTGGAGATGATGATCAAAAACCGTCATTCATTGATGAAGATGAGAAAGAGAAGCACGACGAACTTCTTGCCCTTCCACCTCATGGTTCCGAAGTCTTTATTGGTGGACTTCCTCGGGATGTATGTGAAGATGATTTAAGGGATTTGTGCGAGCCGATGGGTGACATTCTTGAGGTGCGATTAATGAAAGACAGGGACACGGGTGAAAACAAGGGCTATGCCTTTGTTGCTTTTAAAACAAAAGAGGTAGCACAAAAGGCAATCGAGGAGATACATAGCAGGGAATTTAAGGGTAAAACTTTGAGGTGTTCACTTTCTGAAACCAAACACAGATTATTCATTGGTAATGTTCCAAAAACATGGACGGAAGATGACTTTAGGAAAGTCATTGAAGGAGTTGGTCCTGGAGTTGAAAATATCGAGCTCATAAAGGACCCTCAAAATCCAAGTAGGAATCGTGGATTTGCTTTTGTTTTGTATTACAATAATGCATGTGCTGATTATTCTCGGCAAAAGATGTCAAATGCAAGCTTTAAGCTGGAAGGCAATACACCCACTGTCACATGGGCAGATCCAAAGAACTCTCCTGATCATTCGGCTTCTTCACAGGTTAAAGCTCTGTACGTCAAGAACATACCAGAGAATGTTACCACCGAACAACTGAAGGAACTATTCCGTCGCCATGGAGAAGTAACAAAAGTGGTCATGCCACCTGGCAAAGCTGGAGGGAAACGCGATTTTGGCTTCATTCATTATGCAGAGAGGTCAAGTGCATTGAAAGCTGTAAAAGATACTGAGAAATATGAAATTGATGGACAAGTTCTTGAAGTTGTTCTTGCGAAGCCTCAAGCTGATAAAAAACCAGATGGAGGGTACGGCTACAATCCTGGACTGCATCCAAACCATCTTCCTCATCCTGCGTATGGTAACTTTTCTGGAAATCCTTATGGCTCTTTAGGGGCTGGATATGGTGTTGGTGGTGGTTATCAACAGCCGATGATATATGGTAGGGGTCCAATGCCAGCAGGAATGCAAATGGTTCCAATGGTGTTACCTGACGGTCGAATTGGCTATGTCCTACAACAACCTGGTGTACAAGCGCCACCCAGCCGACCTCGCAGAAGTGATCGGAGTAATGGTCCAAGTGGGCAGCCAGGGCGAGGAGGTGGTAGTGGCAATGATGAAGGGAATCGTAGTAGAAGGTATCGACCCTATTAG 1446 0.4426 MSEGAEIDERVDLDEENFMEEIDDDVEEQIDDDGVDGGEDENAEGSVEEHEYEDSTAEVGGKDQLPEAEKSDIATEFGDDDQKPSFIDEDEKEKHDELLALPPHGSEVFIGGLPRDVCEDDLRDLCEPMGDILEVRLMKDRDTGENKGYAFVAFKTKEVAQKAIEEIHSREFKGKTLRCSLSETKHRLFIGNVPKTWTEDDFRKVIEGVGPGVENIELIKDPQNPSRNRGFAFVLYYNNACADYSRQKMSNASFKLEGNTPTVTWADPKNSPDHSASSQVKALYVKNIPENVTTEQLKELFRRHGEVTKVVMPPGKAGGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQADKKPDGGYGYNPGLHPNHLPHPAYGNFSGNPYGSLGAGYGVGGGYQQPMIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGVQAPPSRPRRSDRSNGPSGQPGRGGGSGNDEGNRSRRYRPY* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0059 481 SUPERFAMILY RNA-binding domain, RBD 275 373 IPR035979 GO:0003676
Vra5g0059 481 MobiDBLite consensus disorder prediction 49 86 - -
Vra5g0059 481 CDD RRM3_hnRNPR_like 280 358 - -
Vra5g0059 481 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN Q 2 479 - -
Vra5g0059 481 PANTHER GEO13361P1-RELATED 2 479 - -
Vra5g0059 481 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 178 IPR000504 GO:0003723
Vra5g0059 481 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 283 351 IPR000504 GO:0003723
Vra5g0059 481 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 188 254 IPR000504 GO:0003723
Vra5g0059 481 Gene3D - 268 403 IPR012677 -
Vra5g0059 481 CDD RRM_SF 108 180 - -
Vra5g0059 481 Gene3D - 9 186 IPR012677 -
Vra5g0059 481 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 186 268 IPR000504 GO:0003723
Vra5g0059 481 SMART rrm1_1 187 264 IPR000504 GO:0003723
Vra5g0059 481 SMART rrm1_1 107 180 IPR000504 GO:0003723
Vra5g0059 481 SMART rrm1_1 282 354 IPR000504 GO:0003723
Vra5g0059 481 Gene3D - 187 267 IPR012677 -
Vra5g0059 481 SUPERFAMILY RNA-binding domain, RBD 103 271 IPR035979 GO:0003676
Vra5g0059 481 MobiDBLite consensus disorder prediction 1 86 - -
Vra5g0059 481 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 184 IPR000504 GO:0003723
Vra5g0059 481 MobiDBLite consensus disorder prediction 8 48 - -
Vra5g0059 481 MobiDBLite consensus disorder prediction 437 481 - -
Vra5g0059 481 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 281 358 IPR000504 GO:0003723
Vra5g0059 481 MobiDBLite consensus disorder prediction 448 462 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0059 Vra-Chr5 462740 468478 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0059 108 412 Eukaryotic Initiation Factors Gene Family AT1G71770 26.744 7.82e-17 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0059 K13161 - gmx:100790907 850.121