Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0054 ATGTCCGTCGGCGAAACTGCTTGTTCATACGCATCTATCATCCTTCACGATGAAGGAATCGCCGTCACTGCCGACAATATCACCACTTTGTTGAAAACTGCCAAGGTTCAAGTCGAATCTTACTGGCCTACCTTGTTTGCTAAACTTGCCGAGAAGAAAAATCTTGGCGATTTGATTGCAAATGCTGCAGGCGGTGGGGCACCAGTCGCTGTTGCAGCTGCCCCAGTTGCTGCCGCAGGTGGAGGTGCAGCTGCGGCCGCCCCTGCCGCTGAGGAGAAAAAGAAGGAAGAACCTGAAGAAGAGAGTGACGATGATATGGGATTCGGCTTGTTCGATTAG 339 0.5162 MSVGETACSYASIILHDEGIAVTADNITTLLKTAKVQVESYWPTLFAKLAEKKNLGDLIANAAGGGAPVAVAAAPVAAAGGGAAAAAPAAEEKKKEEPEEESDDDMGFGLFD* 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0054 112 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P1 1 105 - -
Vra5g0054 112 CDD Ribosomal_P1 5 111 - -
Vra5g0054 112 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN 1 105 - -
Vra5g0054 112 Hamap 50S ribosomal protein L12 [rpl12]. 6 112 IPR027534 GO:0003735|GO:0005840|GO:0006414
Vra5g0054 112 Gene3D - 1 62 IPR038716 -
Vra5g0054 112 MobiDBLite consensus disorder prediction 97 112 - -
Vra5g0054 112 Pfam 60s Acidic ribosomal protein 22 111 - -
Vra5g0054 112 MobiDBLite consensus disorder prediction 85 112 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0054 1 112 Cytoplasmic Ribosomal Protein Gene Family AT5G24510 56.140 8.35e-39 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0054 K02942 - gmx:100791962 134.42