Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0051 ATGGCACCTAATACCACTTTCTTGCTCTCCTTCACATCTTCCTCCTTACCCATACCCTTATTCAACCACCATCTCCACACCCAATTCAGATCTTCCCACAAATCATTCTTTTCCTTTTCCAAGGCTACGACTTTCTCCTTCACCGCCTCGGTGGCCACGGTGGATAAAGCAAGGGTCGTTCACGGAGGAGAAAACGCGGAGAAAGAAACGTTCAAGCAACCAAGACCAACCGAAGTCTACATCTGCAACCTTCCAAGAAGCTGTGACGCACAACATCTACTTCATATGTTCAACCCTCATGGAACCGTACTCTCTGCTCAGGTTTGCCGCAGTGAGGAGACTGGTGAGAGTAGAGGGAGTGCTTATGTCACAATGGCATCTATTGACTCCGCAAAAAAGGCAATTGAGGCATTGGATGCATCGGATGTTGGTGGGCGCGAAGTGCTGGTTAGATTTTCAGCTGAGATGAATCCCAAGAGGAGAAAGAATCTTGACACGATGAATTCGTTACCCATGAGAACTATATACTATGAAGGTCCTCATAAGTTGTATGTTGGGAATCTTTCCAAGTTTACCATACCTGAAGACCTGAGGCAGCTTTTTGGTAGATTTGGTAATGTGACCAGTGTAAGAGTGTTGCAAGATACGAGACAAGGGAAACAAAGGGTCTATGCGTTTGTCTCCTATCTTTCAGAGAGAGAACGAAATGCTGCACTATCTCTCAATGGAACGGTGCTTTGTGGTCGAACACTAGTGATTAGAGAGCGTGTAAAGAGAGAGGAATAA 786 0.4567 MAPNTTFLLSFTSSSLPIPLFNHHLHTQFRSSHKSFFSFSKATTFSFTASVATVDKARVVHGGENAEKETFKQPRPTEVYICNLPRSCDAQHLLHMFNPHGTVLSAQVCRSEETGESRGSAYVTMASIDSAKKAIEALDASDVGGREVLVRFSAEMNPKRRKNLDTMNSLPMRTIYYEGPHKLYVGNLSKFTIPEDLRQLFGRFGNVTSVRVLQDTRQGKQRVYAFVSYLSERERNAALSLNGTVLCGRTLVIRERVKREE* 262
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0051 261 Gene3D - 50 167 IPR012677 -
Vra5g0051 261 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 181 258 IPR000504 GO:0003723
Vra5g0051 261 SUPERFAMILY RNA-binding domain, RBD 70 164 IPR035979 GO:0003676
Vra5g0051 261 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 183 251 IPR000504 GO:0003723
Vra5g0051 261 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 79 148 IPR000504 GO:0003723
Vra5g0051 261 SMART rrm1_1 78 151 IPR000504 GO:0003723
Vra5g0051 261 SMART rrm1_1 182 254 IPR000504 GO:0003723
Vra5g0051 261 Gene3D - 173 261 IPR012677 -
Vra5g0051 261 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 21 261 - -
Vra5g0051 261 SUPERFAMILY RNA-binding domain, RBD 176 259 IPR035979 GO:0003676
Vra5g0051 261 PANTHER OS02G0815200 PROTEIN 21 261 - -
Vra5g0051 261 CDD RRM_SF 183 254 - -
Vra5g0051 261 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 77 155 IPR000504 GO:0003723
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vra5g0051 Vra-Chr5 415780 417378 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0051 64 261 Eukaryotic Initiation Factors Gene Family AT1G22760 30.244 1.06e-15 74.7
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0051 - - vun:114164610 440.269