Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vra5g0051 | ATGGCACCTAATACCACTTTCTTGCTCTCCTTCACATCTTCCTCCTTACCCATACCCTTATTCAACCACCATCTCCACACCCAATTCAGATCTTCCCACAAATCATTCTTTTCCTTTTCCAAGGCTACGACTTTCTCCTTCACCGCCTCGGTGGCCACGGTGGATAAAGCAAGGGTCGTTCACGGAGGAGAAAACGCGGAGAAAGAAACGTTCAAGCAACCAAGACCAACCGAAGTCTACATCTGCAACCTTCCAAGAAGCTGTGACGCACAACATCTACTTCATATGTTCAACCCTCATGGAACCGTACTCTCTGCTCAGGTTTGCCGCAGTGAGGAGACTGGTGAGAGTAGAGGGAGTGCTTATGTCACAATGGCATCTATTGACTCCGCAAAAAAGGCAATTGAGGCATTGGATGCATCGGATGTTGGTGGGCGCGAAGTGCTGGTTAGATTTTCAGCTGAGATGAATCCCAAGAGGAGAAAGAATCTTGACACGATGAATTCGTTACCCATGAGAACTATATACTATGAAGGTCCTCATAAGTTGTATGTTGGGAATCTTTCCAAGTTTACCATACCTGAAGACCTGAGGCAGCTTTTTGGTAGATTTGGTAATGTGACCAGTGTAAGAGTGTTGCAAGATACGAGACAAGGGAAACAAAGGGTCTATGCGTTTGTCTCCTATCTTTCAGAGAGAGAACGAAATGCTGCACTATCTCTCAATGGAACGGTGCTTTGTGGTCGAACACTAGTGATTAGAGAGCGTGTAAAGAGAGAGGAATAA | 786 | 0.4567 | MAPNTTFLLSFTSSSLPIPLFNHHLHTQFRSSHKSFFSFSKATTFSFTASVATVDKARVVHGGENAEKETFKQPRPTEVYICNLPRSCDAQHLLHMFNPHGTVLSAQVCRSEETGESRGSAYVTMASIDSAKKAIEALDASDVGGREVLVRFSAEMNPKRRKNLDTMNSLPMRTIYYEGPHKLYVGNLSKFTIPEDLRQLFGRFGNVTSVRVLQDTRQGKQRVYAFVSYLSERERNAALSLNGTVLCGRTLVIRERVKREE* | 262 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vra5g0051 | 261 | Gene3D | - | 50 | 167 | IPR012677 | - | |
Vra5g0051 | 261 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 181 | 258 | IPR000504 | GO:0003723 | |
Vra5g0051 | 261 | SUPERFAMILY | RNA-binding domain, RBD | 70 | 164 | IPR035979 | GO:0003676 | |
Vra5g0051 | 261 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 183 | 251 | IPR000504 | GO:0003723 | |
Vra5g0051 | 261 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 79 | 148 | IPR000504 | GO:0003723 | |
Vra5g0051 | 261 | SMART | rrm1_1 | 78 | 151 | IPR000504 | GO:0003723 | |
Vra5g0051 | 261 | SMART | rrm1_1 | 182 | 254 | IPR000504 | GO:0003723 | |
Vra5g0051 | 261 | Gene3D | - | 173 | 261 | IPR012677 | - | |
Vra5g0051 | 261 | PANTHER | RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN | 21 | 261 | - | - | |
Vra5g0051 | 261 | SUPERFAMILY | RNA-binding domain, RBD | 176 | 259 | IPR035979 | GO:0003676 | |
Vra5g0051 | 261 | PANTHER | OS02G0815200 PROTEIN | 21 | 261 | - | - | |
Vra5g0051 | 261 | CDD | RRM_SF | 183 | 254 | - | - | |
Vra5g0051 | 261 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 77 | 155 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vra5g0051 | Vra-Chr5 | 415780 | 417378 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vra5g0051 | 64 | 261 | Eukaryotic Initiation Factors Gene Family | AT1G22760 | 30.244 | 1.06e-15 | 74.7 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vra5g0051 | - | - | vun:114164610 | 440.269 |