Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0048 ATGGGTGAAGTGGCGGGTGAGAAGGGTGTGATGCAGACTCAGGAGGAACAGAGCAACAATGCCTCCATGGTTCGGTGGGAACGTTTTCTGCCTCGCATGGTGCTTCGGGTGTTGCTTGTGGAAGCTGATGATTCTACTCGACAGATCATTGCTGCGCTTCTCCGTAAATGCAGTTACAAAGTTGCCACAGCTTGTGATGGCCTAAAGGCATGGGAGACATTGAAGAACAAAGCATCTGACATAGATCTCATATTAACTGAAGTGGATTTGCCATCAATATCTGGATTTTCACTTCTTAGTTTAATCATGGAGCATGACGTTTGCAAAAACATTCCCGTCATAATGATGTCTTCTCACGATTCAGTTAGCATGGTGTTCAGATGCATGTTAAAAGGTGCAGCTGATTTTCTTATAAAACCTGTTCGCAAGAATGAGCTAAGAAACTTGTGGCAGCATGTGTGGAGAAGGCATGTCATTGAACTTGGTTTTGCTGCAGAAAATCATGCTGCTAGCAATGATTCTAGCGGTTCTGTGGCTTCTACACCAAAAAATAATGAATGCAGCGAGAAAACAAGTGAGGTTCAACTGAAGAGTTCTTCAAATTTGAGCGATGGCACAATTAAGCATGACAACTCTACAAAATGTGAAAGGGAATCAGATAAGCATAATGACAAAGCTGGAGCCAAATCAATATTTATATCAGAAGATGAAGGGTGCGACAAAACTTTTAAACCAACAGGCTTAAGGCCAGGTCAAGGATATGATTTCGGTGAAATAAGAAATCAAGATGAACTTCTAAGAATAGAGTTGAGCAAAGCCAATCCTGCAATTAGTGTTGATATTCGTGGGTGCATTGATGAATTGGAAGGTCCGTCTACTGGGGCCATTGACTTGATTGGTACATTCAATACACTTCCAGAGAGCACTGATGAAAAATGTAGTGTCAGTAGTGGTAACGTTTCCAAGTTTGACTTTGATACACAACTGGAACTTTCTATAAGAAGATATTTTCCCGGAGGCTCGTACAAAGCTGTATTTGAGGAAAGGCAAATATTGAACCATTCAAATGCTTCTGCCTTTTCTAGGTATGGTAGTAGTAAATTGTTGCAGCCCCTTTGTCCAACACCATCAACTATCTCTGCAAAATTAACAAACGTTAGTCATGATTCTCAGAAATCTCCTAAGTTATTTGAAAATGCAACTACTTCTCATCATTGTGGTGAAAAAGATCAAATTAAGGAGAAAATCACCACTCCAGATATTGGTCAATCTGGACAAGTTGATCCAAAATTACCGAACAGTCAACTTGTATTCTTTCCTGCTAATGGGGTTACTTATGATCACAAATCAACTGGAAATGGAAATGTCTTCCCTTCTATGCTTTATTCTCAATCAGGTGTCCATACCATATGGACTCCAAAATCATTGTTCCAGAAAGAGAGTTCTCCGTTTCCCACTAGTACTTCCTCCCAGTCTAATCCTCAAAGTCGGAACTCAAAACATCATCACTGCTCTGACGATGCAACCCATGATTCAATTCAAAATGTAAATGACCAAAGCCATTTGGATTTTGAGACACAGGACTCTCCTGCTGCTAGTCAGACTGCTGATACTGCCCTTTACCATGATACAACAAATCATAATTGTAGTGGTGTATACAGAAGCATAGGCTGCACAAGTGATGGAAATACTACTTCAGCCAAGGTAGCCAAGGACAACCACGAAAGTTTCACTGATATTGGTCACTTCAGTCATGATGGATTCATAGGGACAGATTCTCATCGCACCAGCCAACGAGAAGCAGCTCTAACAAAGTTTCGACTTAAGCGGAAAGACAGATGCTATGAGAAAAAGGTCCGATATCAAAGCCGGAAGAGATTGGCAGAGCAGCGCCCTCGGGTGAAAGGGCAATTTGTTCGCCAAGTAGACAGTGGTCATCCGGTATCAGATCTGGGTGGTGATTCCTGA 1968 0.4157 MGEVAGEKGVMQTQEEQSNNASMVRWERFLPRMVLRVLLVEADDSTRQIIAALLRKCSYKVATACDGLKAWETLKNKASDIDLILTEVDLPSISGFSLLSLIMEHDVCKNIPVIMMSSHDSVSMVFRCMLKGAADFLIKPVRKNELRNLWQHVWRRHVIELGFAAENHAASNDSSGSVASTPKNNECSEKTSEVQLKSSSNLSDGTIKHDNSTKCERESDKHNDKAGAKSIFISEDEGCDKTFKPTGLRPGQGYDFGEIRNQDELLRIELSKANPAISVDIRGCIDELEGPSTGAIDLIGTFNTLPESTDEKCSVSSGNVSKFDFDTQLELSIRRYFPGGSYKAVFEERQILNHSNASAFSRYGSSKLLQPLCPTPSTISAKLTNVSHDSQKSPKLFENATTSHHCGEKDQIKEKITTPDIGQSGQVDPKLPNSQLVFFPANGVTYDHKSTGNGNVFPSMLYSQSGVHTIWTPKSLFQKESSPFPTSTSSQSNPQSRNSKHHHCSDDATHDSIQNVNDQSHLDFETQDSPAASQTADTALYHDTTNHNCSGVYRSIGCTSDGNTTSAKVAKDNHESFTDIGHFSHDGFIGTDSHRTSQREAALTKFRLKRKDRCYEKKVRYQSRKRLAEQRPRVKGQFVRQVDSGHPVSDLGGDS* 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0048 655 MobiDBLite consensus disorder prediction 480 512 - -
Vra5g0048 655 MobiDBLite consensus disorder prediction 170 222 - -
Vra5g0048 655 Pfam CCT motif 599 641 IPR010402 GO:0005515
Vra5g0048 655 MobiDBLite consensus disorder prediction 624 655 - -
Vra5g0048 655 MobiDBLite consensus disorder prediction 480 498 - -
Vra5g0048 655 CDD psREC_PRR 37 140 - -
Vra5g0048 655 PANTHER TWO-COMPONENT RESPONSE REGULATOR 22 194 IPR045279 GO:0009736
Vra5g0048 655 PANTHER TWO-COMPONENT RESPONSE REGULATOR 202 633 IPR045279 GO:0009736
Vra5g0048 655 SMART REC_2 35 150 IPR001789 GO:0000160
Vra5g0048 655 MobiDBLite consensus disorder prediction 170 208 - -
Vra5g0048 655 Gene3D - 33 237 - -
Vra5g0048 655 PANTHER PRR RESPONSE REGULATOR 22 194 - -
Vra5g0048 655 PANTHER PRR RESPONSE REGULATOR 202 633 - -
Vra5g0048 655 ProSiteProfiles CCT domain profile. 599 641 IPR010402 GO:0005515
Vra5g0048 655 SUPERFAMILY CheY-like 35 161 IPR011006 -
Vra5g0048 655 ProSiteProfiles Response regulatory domain profile. 36 154 IPR001789 GO:0000160
Vra5g0048 655 Pfam Response regulator receiver domain 37 148 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0048 Vra-Chr5 404026 408131 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0048 598 644 Response Regulator Gene Family AT5G24470 89.362 1.11e-20 94.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Vra5g0048 Response_reg 1.6e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0048 K12130 - gmx:100779346 989.178