Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0045 ATGGCTGAAATGTTAGAATCAAGTAGAAAGGTTGTGAATGGGAGAGAGGAGTATCTTAAAAGGGAAGAAGAAGAAGAAGAAGAAGATGAGTTGGCGTTTTGCATGGAAAAGACGGTTTCTTTTGTGGTTCCAATGGCTTTGAAAACATTGTCTGAGCTGAGGGTGTTTGATATCTTAGCCAAAGGTGGCAAACTCTGTGCGAAAGAGATCGCAGTTGAGATAGGAAGCAAGAACCCTGAAGCTCCTGCAATGTTGGATCGTCTTCTTAGCCTTTTGGTGAGTCACTCTCTGCTATCTTGTTCCATCTCTCAACAAGAACCACACCCTCAGAAGTTCTACACCCTCTCTCCTGCTTCCAGATATTTTGTCACTGATCCTCAAGCTGTATCATTGGGATCCTCTGTCAAATTACTTCTGGACGACATCTTCTTGAAAAGCTGGAGCGAACTGAAAGGAGCAATCCTAGAAGGGGGTGTGGCATTCGACAGGGCCCATGGCATGCATGCCTTCGAATATCCACGTGTGGATCCTAGGTTTAACGAGGTTTTCAACAACGGTATGATAGGCCTCACCACTGTATTTATGAAGAGGATTCTTGAGTTATACAACGGTTTTGAGCATGTCACAAGGCTCGTCGACGTTGGTGGAGGTTATGGAGTCAACCTCAAATTGATCAAATCCAAACACCCTCACATTCAGGCTATTAACTTTGACTTGCCTCATGTGGTGGAAAATGCCCCTCTCCATTCAGGTGTGGAGCATGTGGGAGGAGACATGTTTGAAAGCGTTCCTTCAGGAGATGCGATTTTTATGAAGTGGGTACTTCATGATTGGAGTGATGAACATTGCGTGAAGCTGTTGAAGAATTGCTACAAAGGGATTCCTGATGATGGAAAGGTTATTGTGGTGGACTCAATTGTGTCGACGGTGCCGGAGAGAAGTGTTACTGCTAAGAGTGCTTTGGGATCTGATGTTATAATGATGACTGAAAACCCAGGAGGGAAAGAGCGAACACGCCAACAAATCATAGAATTGGCAGAAGCATCTGGGTTTAGTGGGATCAGATTCATATGCTCTATATGTGGGAACTGGGTTATGGAGTTCTACAAGTAA 1113 0.4447 MAEMLESSRKVVNGREEYLKREEEEEEEDELAFCMEKTVSFVVPMALKTLSELRVFDILAKGGKLCAKEIAVEIGSKNPEAPAMLDRLLSLLVSHSLLSCSISQQEPHPQKFYTLSPASRYFVTDPQAVSLGSSVKLLLDDIFLKSWSELKGAILEGGVAFDRAHGMHAFEYPRVDPRFNEVFNNGMIGLTTVFMKRILELYNGFEHVTRLVDVGGGYGVNLKLIKSKHPHIQAINFDLPHVVENAPLHSGVEHVGGDMFESVPSGDAIFMKWVLHDWSDEHCVKLLKNCYKGIPDDGKVIVVDSIVSTVPERSVTAKSALGSDVIMMTENPGGKERTRQQIIELAEASGFSGIRFICSICGNWVMEFYK* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0045 370 Gene3D - 12 122 IPR036388 -
Vra5g0045 370 PANTHER CAFFEIC ACID O-METHYLTRANSFERASE 7 370 - -
Vra5g0045 370 PIRSF O-mtase 13 370 IPR016461 GO:0008168
Vra5g0045 370 SUPERFAMILY "Winged helix" DNA-binding domain 25 125 IPR036390 -
Vra5g0045 370 Pfam O-methyltransferase domain 147 352 IPR001077 GO:0008171
Vra5g0045 370 Pfam Dimerisation domain 45 93 IPR012967 GO:0046983
Vra5g0045 370 PANTHER O-METHYLTRANSFERASE 7 370 IPR016461 GO:0008168
Vra5g0045 370 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 131 369 IPR029063 -
Vra5g0045 370 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 35 370 IPR016461 GO:0008168
Vra5g0045 370 Gene3D Vaccinia Virus protein VP39 124 370 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0045 Vra-Chr5 394098 395838 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0045 28 370 Monolignol Biosynthesis Gene Families AT5G54160 51.445 2.12e-128 371
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0045 K13066 - pvu:PHAVU_009G2586001 516.153