Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0044 ATGACAAGCCTTCCAAATTCAAGGCTGAACGGCGAAGAGAAGAAGAAGGAAGCAGAAGAAAGAGAAGATGAAGAAAGCTTCTCGCGTGCCATGCAGCTTGTGAGCTCCGTNGTGCTACCGATGGCAGTGCAATCGGCGACGGAGCTGGGTGTGTTTGAGGTGCTGAAAGAAGCGGGTGAAGGTGCTAAGCTCTCTGCAAAGGACATAGCNTCCAAGATTTCCTGCACCAACCCAGAAGCAGCCTCAATGCTAGATCGTCTCCTCNCTCTTCTTTCCTCTCACTCCATTCTTCACTCTNCCCTCNTTTCCGACAACCTTGTCCCTCCCACCTTTCACAGGCTCTACTCCATCACTCCCCTCGCCACATTCTTTGCTCGCAATTCTGATGGGGTTTCATTGGGACCCTTGATGGCCGTGACCCTAGACAAAATCTTCCTACACAGCTGGAGTGAGCTGAAGAATGCAATTAGGGAGGGGGGTATTCCATTCAACAGGGTCTATGGCACCCATGCTTTTGAGTATCCAAGGTTGGACTCAAGGTTCAATAAAGTTTTCAACACAGGAATGATCAATCACACGACTTTGGTGATGAAGAGGGTTCTGGAATCCTACAAAGGTTTTGACGGGATAAAAAGTTTGGTGGATGTTGGTGGTGGTCTTGGGATCAACATTAAAATGATCACTTCAAAATACCCTCATATCCATGGCATCAATTTCGACTTGCCTCATGTCATTCAGGATGCTCCTTCCTATCCTGGAGTGGACCACGTTTGCGGAGATATGTTTGAAAACGTGCCTAAAGGAGATGCCATTTTTTTGAAGTGGATACTTCATGATTGGAGTGATGAACAGTGTGTGAAGCTGTTGAAGAACTGCTATGATGCAATTCCAGATGATGGAAAGGTGATAGTAATGGAAGCAGTTCTTCCAACAACACCTGAGACTAACAGTGCTGTTTATAAGGCAATTTTAGAATTGGATGTTTCGATGATGACTCAAAATCCGGGAGGGAAAGAGCGATGTGAGCAAGAGTTCATGGATTTGGCAACTGCAGCTGGATTTAGTGGCATCAGATATGAATGTCGTGCAAACATTTTCTCTGTTATGGAGTTCTTCAAGTAA 1122 0.4563 MTSLPNSRLNGEEKKKEAEEREDEESFSRAMQLVSSVVLPMAVQSATELGVFEVLKEAGEGAKLSAKDIASKISCTNPEAASMLDRLLXLLSSHSILHSXLXSDNLVPPTFHRLYSITPLATFFARNSDGVSLGPLMAVTLDKIFLHSWSELKNAIREGGIPFNRVYGTHAFEYPRLDSRFNKVFNTGMINHTTLVMKRVLESYKGFDGIKSLVDVGGGLGINIKMITSKYPHIHGINFDLPHVIQDAPSYPGVDHVCGDMFENVPKGDAIFLKWILHDWSDEQCVKLLKNCYDAIPDDGKVIVMEAVLPTTPETNSAVYKAILELDVSMMTQNPGGKERCEQEFMDLATAAGFSGIRYECRANIFSVMEFFK* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0044 373 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 31 373 IPR016461 GO:0008168
Vra5g0044 373 Pfam O-methyltransferase domain 149 355 IPR001077 GO:0008171
Vra5g0044 373 MobiDBLite consensus disorder prediction 9 24 - -
Vra5g0044 373 MobiDBLite consensus disorder prediction 1 24 - -
Vra5g0044 373 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 129 371 IPR029063 -
Vra5g0044 373 PIRSF O-mtase 8 373 IPR016461 GO:0008168
Vra5g0044 373 PANTHER CAFFEIC ACID O-METHYLTRANSFERASE 6 373 - -
Vra5g0044 373 Pfam Dimerisation domain 41 91 IPR012967 GO:0046983
Vra5g0044 373 Gene3D - 7 124 IPR036388 -
Vra5g0044 373 Gene3D Vaccinia Virus protein VP39 125 373 IPR029063 -
Vra5g0044 373 PANTHER O-METHYLTRANSFERASE 6 373 IPR016461 GO:0008168
Vra5g0044 373 SUPERFAMILY "Winged helix" DNA-binding domain 21 127 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0044 Vra-Chr5 386613 388847 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0044 23 373 Monolignol Biosynthesis Gene Families AT5G54160 53.846 6.46e-139 398
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0044 K13066 - gmx:100803633 546.584