Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0043 ATGGAAAACCTTCCAAATTCAAAGCTGAACGGCGAAGAGAAGAAGAAGGAAGCAGAAGAAAGAGAAGATGAAGAAAGCTTCTCGCGTGCCATGCAGCTTGTGAGCTCCGTNGTGCTACCGATGGCAGTGCAATCGGCGACGGAGCTGGGTGTGTTTGAGGTGCTGAAAGAAGCGGGTGAAGGTGCTAAGCTCTCTGCAAAGGACATAGCNTCCAAGATTTCCTGCACCAACCCAGAAGCAGCCTCAATGCTAGATCGTCTCCTCNCTCTTCTTTCCTCTCACTCCATTCTTCACTCTTCCCTCGTTTCCGACAACCTTGTCCCTCCCACCTTTCACAGGCTCTACTCCATCACTCCCCTCGCCACATTCTTTGCTCGCAATTCTGATGGGGTTTCATTGGGACCCTTGATGGCCTTGCTCCAAGACAAAATCTTCCTACACAGCTGGACTGAGCTGAAAGATGCAATTCGGGAGGGCGGTATTCCATTCAACAGGGCGTATGGCACCCATGCTTTTGAGTATCCAAGGTTGGACTCAAGGTTCAATAATGTTTTCAACACAGCAATGATTAATCACACGACTTTGGTGATGAAGAGGGTTCTGGAATCCTACAAAGGTTTTGAGGGCATAAAAAGGCTGGTGGATGTTGGTGGTGGTCTTGGGATCAACATTAGCTTGATCACTTCAAAATACCCTCATATCCATGGCATCAATTTCGACCTGCCTCACGTCATTCAAGATGCTCCTTCATATCCTGGAGTGGAACACGTTGGGGGAGATATGTTTGAAAATGTGCCTAAAGGAGACGCCACATTTATGAAGTGGATACTTCATGATTGGAGTGATGAACAGTGTGTGAAACTGTTGAAGAACTGCTATGATGCAATTCCTGATGATGGAAAGGTGATAGTAGTGGAAGCAGTTCTTCCAAAAACACCAGAGACAAATGATGCTTATAAGGCAGTTTCACAAATGGATGTTTTGATGATGACTCAAAACCCGGGAGGGAAAGAGCGATGTGAACAAGAGTTCATGGATTTGGCAACTGCAGCTGGATTTAGTGGCATCAGATATGAATGTCATGTCAACCTTTTCTGGGTTATGGAGTTCTTCAAGTAG 1119 0.4611 MENLPNSKLNGEEKKKEAEEREDEESFSRAMQLVSSVVLPMAVQSATELGVFEVLKEAGEGAKLSAKDIASKISCTNPEAASMLDRLLXLLSSHSILHSSLVSDNLVPPTFHRLYSITPLATFFARNSDGVSLGPLMALLQDKIFLHSWTELKDAIREGGIPFNRAYGTHAFEYPRLDSRFNNVFNTAMINHTTLVMKRVLESYKGFEGIKRLVDVGGGLGINISLITSKYPHIHGINFDLPHVIQDAPSYPGVEHVGGDMFENVPKGDATFMKWILHDWSDEQCVKLLKNCYDAIPDDGKVIVVEAVLPKTPETNDAYKAVSQMDVLMMTQNPGGKERCEQEFMDLATAAGFSGIRYECHVNLFWVMEFFK* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0043 372 Gene3D Vaccinia Virus protein VP39 125 372 IPR029063 -
Vra5g0043 372 Pfam O-methyltransferase domain 149 354 IPR001077 GO:0008171
Vra5g0043 372 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 31 372 IPR016461 GO:0008168
Vra5g0043 372 Pfam Dimerisation domain 41 91 IPR012967 GO:0046983
Vra5g0043 372 Gene3D - 7 124 IPR036388 -
Vra5g0043 372 CDD AdoMet_MTases 212 305 - -
Vra5g0043 372 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 129 370 IPR029063 -
Vra5g0043 372 PIRSF O-mtase 8 372 IPR016461 GO:0008168
Vra5g0043 372 SUPERFAMILY "Winged helix" DNA-binding domain 21 127 IPR036390 -
Vra5g0043 372 PANTHER CAFFEIC ACID O-METHYLTRANSFERASE 6 372 - -
Vra5g0043 372 MobiDBLite consensus disorder prediction 7 26 - -
Vra5g0043 372 MobiDBLite consensus disorder prediction 1 26 - -
Vra5g0043 372 PANTHER O-METHYLTRANSFERASE 6 372 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0043 Vra-Chr5 382238 384868 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0043 23 372 Monolignol Biosynthesis Gene Families AT5G54160 54.286 1.47e-141 404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0043 K13066 - gmx:100803633 591.652