LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra5g0042	ATGGACGCCTACTCCTCTGGAGAAGAAGTGGTTATTAAGACACGAAAACCATATACTATCACAAAGCAAAGAGAAAGATGGACCGAGGAGGAACATAATAGATTTCTGGAAGCCTTAAAGCTATACGGGCGAGCATGGCAGCGCATAGAAGAGCACATAGGAACAAAGACTGCTGTGCAAATCAGAAGTCACGCTCAGAAATTCTTTTCAAAGCTGGAGAAAGAGGCCTTTGTGAAGGGTGTTCCAATAGGACAAGCTCTTGATATAGACATACCCCCTCCAAGGCCAAAAAGAAAACCAAGCAATCCTTATCCCAGGAAGATCAATGCTGCTGTCCCAAAGAATGGAAAGTCTCTCATTTCAATTGCATCTTCACATGCTAAACATGCACTGGACTTGGAGAAACAACCACTTCCAGAGCATTATCAGGAGGACCAACTGCCAACAACTGTAAAACAAAATAACGACGAAAGCAGCTCAAAAGTGTTTGCCATTCTCCAGGAAGGACCTGCTTCATCTGTATCACTGCCGCTCAGAAATCCAAGTCCCTTGAGGGAGTTTATACCCTCAATAAAAGAGGTAACAACTCTAGATGAAACAAATGAGTCTTTTATTACTGATGAGCTTCAAAATCACAAGTTAGAGTTAGATGACGGAGACCACAAACAAAAGACTAATACCACTTGTAAAGTCTCTAAGTCCGACAATTCTGGTGCTTTGAAATTGGTTCAAACTGAGAAAACAGATGGGATGCAAGGAAATCAGAATTACCCAAGACATGTCCCTGTGCACGTTGTTGACGACAAGTTTAATGGGCATCCTAAGATTGTCACAAACTCTGCTGCATCAAACATAAGTGAAAGTCAAAACAACACAGCACGGTCCTCTCTTCATCAATCGTTTTCTCCTTGTCCTCCCTTCTCACAACACAATCAGGATGATTACCATTCATTTCTTCATATGTCCTCCACGTTTTCAAGTCTTGTTGTCTCTACCTTGCTGCAAAATCCTGCTGCCCATGCTGCAGCAAGTTTTGCTGCTACATTTTGGCCCTATGCAAATGCAGAAACTTCCGCAGATTCTCCCGTGTGCACTCCTCCAAGTGTGACAGCCATTACAGCAGCCACAGTTGCTGCCGCAACTGCATGGTGGGCTGCCCATGGATTGCTTCCTTTGTGTACTCCACTTCATACAGCCTTTGCGTGTCCTCCTGCACCAGCGACTGCAGCTCCATCCATGACTCTCGGTCAATCGCAGCACAAAAACCAACAAGAAGAGGGTAAGCCAGAAAATCCTCCTCCAGAACAATCGGAAGTTCTGCAAGCTCAACACTCAGCTTCCAAGTCACCAGCTGTTTCTTCATCAGAATCTGAGGAGAAGGGAGATACCAATGTAAATACTGCACCAAAGGCTACTAATGATGAGATGAACCAAGCGATTTCCGAGAATCCCGATTCCGAGAAAATAAACGGTAGAAAACCTGTAGACCGTTCCTCGTGTGGTTCTAACACAACCTCTAGCAGTGAAGAGACTGAGATACTAGAGAAGGATGAGAAAGAAAAGGAAGAGCCCAACAAAGCTGATACAAACCTTTTAGGTTCTGAGCCTAATAATCGTCGTAGTAGAAGCATTAGCAACCTTACTGATTCTTGGAAGGAGGTCTCTGAAGAGGGTCGGCTTGCCTTTCAGGCGCTATTCTCCAGGGAGGTGTTGCCACAAAGCTTTTCACCTCCTCATGATTTGATAAATGCAGATAATCAGATTCACAGCATCAACAAGCAAAACGCAGAGTACAAAGATGAAGACCTTGAGACCAAAAAACACAGTCCTATCTGTGATGGGCTGCAGAAAAGCGTGTCATTTGTGAAAGATAATGATGAGGAGGAGGGATTGCTAAGCATGGGTCTTGGACAAGGAAAGCTGAAGAGTCGTCGAACAGGGTTTAAACCTTACAAAAGGTGTTCGGTAGAAGCAAAAGAAAACATGATCGGAACGGCCTGCAACCAAGGTGAAGAGAAAGGTCCAAAGAGAATACGTTTGAACGGGGAAGCTTCAACTTGA	2061	0.4435	MDAYSSGEEVVIKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQIRSHAQKFFSKLEKEAFVKGVPIGQALDIDIPPPRPKRKPSNPYPRKINAAVPKNGKSLISIASSHAKHALDLEKQPLPEHYQEDQLPTTVKQNNDESSSKVFAILQEGPASSVSLPLRNPSPLREFIPSIKEVTTLDETNESFITDELQNHKLELDDGDHKQKTNTTCKVSKSDNSGALKLVQTEKTDGMQGNQNYPRHVPVHVVDDKFNGHPKIVTNSAASNISESQNNTARSSLHQSFSPCPPFSQHNQDDYHSFLHMSSTFSSLVVSTLLQNPAAHAAASFAATFWPYANAETSADSPVCTPPSVTAITAATVAAATAWWAAHGLLPLCTPLHTAFACPPAPATAAPSMTLGQSQHKNQQEEGKPENPPPEQSEVLQAQHSASKSPAVSSSESEEKGDTNVNTAPKATNDEMNQAISENPDSEKINGRKPVDRSSCGSNTTSSSEETEILEKDEKEKEEPNKADTNLLGSEPNNRRSRSISNLTDSWKEVSEEGRLAFQALFSREVLPQSFSPPHDLINADNQIHSINKQNAEYKDEDLETKKHSPICDGLQKSVSFVKDNDEEEGLLSMGLGQGKLKSRRTGFKPYKRCSVEAKENMIGTACNQGEEKGPKRIRLNGEAST*	687

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra5g0042	686	PANTHER	SWI/SNF COMPLEX-RELATED	2	668	-	-
	Vra5g0042	686	SMART	sant	23	71	IPR001005	-
	Vra5g0042	686	MobiDBLite	consensus disorder prediction	530	551	-	-
	Vra5g0042	686	MobiDBLite	consensus disorder prediction	436	485	-	-
	Vra5g0042	686	ProSiteProfiles	Myb-like domain profile.	19	69	IPR001005	-
	Vra5g0042	686	TIGRFAM	myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class	22	71	IPR006447	GO:0003677
	Vra5g0042	686	Gene3D	-	26	73	-	-
	Vra5g0042	686	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	19	73	IPR017930	-
	Vra5g0042	686	ProSiteProfiles	SANT domain profile.	22	73	IPR017884	-
	Vra5g0042	686	Coils	Coil	581	601	-	-
	Vra5g0042	686	MobiDBLite	consensus disorder prediction	410	552	-	-
	Vra5g0042	686	PANTHER	PROTEIN LHY	2	668	-	-
	Vra5g0042	686	MobiDBLite	consensus disorder prediction	88	110	-	-
	Vra5g0042	686	SUPERFAMILY	Homeodomain-like	18	74	IPR009057	-
	Vra5g0042	686	Pfam	Myb-like DNA-binding domain	24	67	IPR001005	-
	Vra5g0042	686	MobiDBLite	consensus disorder prediction	667	686	-	-
	Vra5g0042	686	CDD	SANT	26	69	IPR001005	-
	Vra5g0042	686	MobiDBLite	consensus disorder prediction	510	528	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra5g0042	Vra-Chr5	358808	374444	Dispersed/Transposed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB-related	Vra5g0042		Myb_DNA-binding	2.4e-13	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra5g0042	K12133		-	gmx:778086	954.51