Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0041 ATGTCACCTATTCTTCTCCTCACTTTTCTTCTACTTCTTCTGTGCTTCCCATTTTCTTTCTCTTTGCCTCCAAACTTCTGCACTGAAACATGTGGGGACCTCCATCTTCCTTTTCCATTCTATGTCAACTCTTCTTGTCACTCAATTTCCACTGCTTTCCATCTCTCCTGCACAAATTCATCTACCCTTTTCCTCAGAATTGGCTCGGTCAGCTACAAAGTCTTGGAGTTCTTCCCAGATGGCGTGCTGGTGGACTTTCCCGGCTCATCATCTTGTAGACAGTACAATGACTTGAATTCTTTTGACAGAAGCTTTGCAGGGAAGGATAACTTTGGAGTTTCGGTGGACAATGTTATTGGTCTCTATGACTGTGAGGATTCCTCTCTCTGCAAAGCAGATTGTGAAACTATTGACTTGCCTGGTTGTGATGGAAGGGGTGGAGGCTCCCTTGCCTGCTGCTATCCACTCTCCGACCATACCATATGGCATGTTGGATATGGATTTTCGGTGTTTTCTCAGTTTGGATGCAGGGGGGTTTCTAGTTGGGCCGTTTTGCGAGGCTCAACTTGGGGAAAACGTGGGGTCAAGTTGGAATGGGCACTGCCCAGAAACTCCTCTTACCAAGTTTGTGCAAGAAATGCTGACATGATCAATGCTACATCAATCGAAGGAGGAGTCAGATGTGTCTGTCAAAATGGATATGTTGGTGATGGTTTTGCTAATGGAACTGGATGTTTGCAGGCCTGCATAAAGGACGGAAAGGAAGCATATGGAAGTGACTGCAACATCAAAAGACAAGATCAGAGGAAATTTGTTATCATTGCCGGAATCATTGGCCCAGTTCTGATCGTTGCCTCCCTGGTTGCATTATTTTATCTTCTTAAAAGGCCAGCAAAACCAGGGATGTTTGACACGGAGCAGGCTTACTATCAAAACATTTCAATCCCCAAAGCTTGTAAAACTCGACTGTTCAGCCTCCACGAGCTAGAGGAAGCCACTAAAGGTTTTGAAGAGGGTAAAAAACTTATGCATGACAACAATGGGACAATTTTTGCTGGAGTTTTGAGGGATGGATCTCACGTAGCTGTCCACAAATTACAATGTGAGAAGAAAGACTTAATTCAAGTTCTGTCACAGATCGAGGTTCTGTCCTCTACCGTGCATAGAAACATGGCCCGCATTCTTGGTTGCTGTATTGAATCTGGCAACACTCTAGTAGTTTATGAGTTTCCTTCCAATGGTACTCTGGAGGAACATTTACATCAAAGCAAAGGACAAGAACTACGTTTAGATTGGTACAGGAGATTGACTATCGCTGCAGAAACAGCTAGCATTCTTTCATTCCTACACTACGAGATCTCTCCTCCCATATTTCACCATAACCTTAAATCTGCATGCATCTTCCTTGATGATGATTATTCTGTCAAGATTGCAGGATTTGGTCTGCTCAACTCCAATTTTTACTATGGTTCTCACTTACACAAGAACCACGAAGGCTTTGGCATCTGCAAAAATGATGTCTATGACATGGGTGTGTTGCTTCTTGAAATCATCTCAGGCTCAAATCGCTTGGATTTGCCAAGTTCAGCCTTGCAGCATATAAGGGCTGGAAAATTTGAAGAAATATTTGACCCTTTTCTTTGCTATGATGAACAACCACAGTATCGGCAAGAGCAAATGCAGATCATTGCTGATCTTGCGACAAGATGCCTCTTATTTGGTGTTGATGGAAGGCTGGGAATGGTTGATGTTGTGAGGGAGTTAGTACAGTTGACTAAAGAAAGTCTTGATGGAGGAATTAGCAAAGGAGCTGCACTGGAGGAGACATTCTCAAATTCAAGCCTTCTTCAGATGATATCAATGTCTCCTGATTCTATGAATGTCCCTTGA 1890 0.4328 MSPILLLTFLLLLLCFPFSFSLPPNFCTETCGDLHLPFPFYVNSSCHSISTAFHLSCTNSSTLFLRIGSVSYKVLEFFPDGVLVDFPGSSSCRQYNDLNSFDRSFAGKDNFGVSVDNVIGLYDCEDSSLCKADCETIDLPGCDGRGGGSLACCYPLSDHTIWHVGYGFSVFSQFGCRGVSSWAVLRGSTWGKRGVKLEWALPRNSSYQVCARNADMINATSIEGGVRCVCQNGYVGDGFANGTGCLQACIKDGKEAYGSDCNIKRQDQRKFVIIAGIIGPVLIVASLVALFYLLKRPAKPGMFDTEQAYYQNISIPKACKTRLFSLHELEEATKGFEEGKKLMHDNNGTIFAGVLRDGSHVAVHKLQCEKKDLIQVLSQIEVLSSTVHRNMARILGCCIESGNTLVVYEFPSNGTLEEHLHQSKGQELRLDWYRRLTIAAETASILSFLHYEISPPIFHHNLKSACIFLDDDYSVKIAGFGLLNSNFYYGSHLHKNHEGFGICKNDVYDMGVLLLEIISGSNRLDLPSSALQHIRAGKFEEIFDPFLCYDEQPQYRQEQMQIIADLATRCLLFGVDGRLGMVDVVRELVQLTKESLDGGISKGAALEETFSNSSLLQMISMSPDSMNVP* 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0041 629 ProSiteProfiles Protein kinase domain profile. 336 596 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g0041 629 SUPERFAMILY Protein kinase-like (PK-like) 318 588 IPR011009 -
Vra5g0041 629 Gene3D Phosphorylase Kinase; domain 1 303 410 - -
Vra5g0041 629 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 36 624 IPR045274 GO:0007166
Vra5g0041 629 Pfam Protein tyrosine and serine/threonine kinase 339 486 IPR001245 GO:0004672|GO:0006468
Vra5g0041 629 Gene3D Transferase(Phosphotransferase) domain 1 412 602 - -
Vra5g0041 629 Gene3D Laminin 208 241 - -
Vra5g0041 629 PANTHER OS10G0351500 PROTEIN 36 624 - -
Vra5g0041 629 Pfam Wall-associated receptor kinase galacturonan-binding 27 77 IPR025287 GO:0030247
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0041 Vra-Chr5 353706 356658 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0041 5 591 Receptor kinase-like Gene Family AT2G23450 28.843 1.28e-59 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vra5g0041 PK_Tyr_Ser-Thr 2.2e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0041 - - vra:106760020 1272.3