LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra5g0038	ATGGACTTGATACAACAAGTTAAAGGCACTTATTCTGATAGCAGGGAGGAAGAGGAGGAAGAGGAAGTGACAGAGATTATTGGTATCACAAGAGAAGCAGAAAGCAGCAGGTTACACCACCAAGATGCCGCATCCAATTTTGGAAAGAAGCTAGACCTCATGGAGTTGTCACTGGGGAGCAGCAAGGAAGAGGAAGGGGACGGCAATTTGCAAGGCGGAGGAGGAGGAGGACCGGTTCATCATCATCATCATCACCATCATCACCAGCAGCAGCAGCAGCAGCATGAACATCATCATCATCATGACGGTCACGGAACTTGTTCAAACGCCAAGGAAGTAGTGGAGAAAGAGCACATGTTTGACAAAGTGGTGACACCGAGCGATGTGGGGAAGCTGAACAGGCTGGTGATACCGAAGCAGCACGCGGAGAAGTACTTCCCCCTTGATTCGTCGTCGAACGAGAAGGGTCTGCTCCTGAATTTCGAAGACCGGAATGGGAAGGTGTGGCGGTTCAGATATTCGTATTGGAACAGCAGCCAGAGCTATGTGATGACAAAAGGGTGGAGCCGTTTCGTGAAGGAGAAGAAGCTGGATGCAGGTGACATTGTTTCCTTCCAGCGTGGCCTTGGAGATATGTATAGACATAGGTTGTACATAGATTGGAGGAGAAGGACTGATCATGGCCATCCTCCCTCTGATCCCTCCGCCTCCCCTTTGTTTCTTCCCTCTATCAGATGGTACTCCCTTCCCGCCACCTCCCCCATCGTTCCACCCCGCTACCACCACGATCATCACTTTCACCATCTCAATTACAACAACCTCTTCACTTTCCAGCACCAACACCAGTACCTTGGTCATGCTCATGCTCACGGTGCTGCCACTTCCGCCGCCGCCGCTGCCGCCGCCCATCATCACAACAACTATGGCGAGCATAATTCGGGATCTGGGACCGGCTCACTCTATTACCTCAGGTCCTCCATGCCAATGGGTGGTGGTGCTGATCAAAACTTGGCAGGCAGAGGGAATAGCATTGTGCCCATGATCATCGACTCGGTGCCGGTGAACGTGGGTCATCATAACCATCGGCATGGGCACGGTGGCATGTCGAGTGGCGGAGGTAGTTCTACCACAAGTAGTGGAAAACGACTGAGGCTATTTGGGGTGAACATGGAGTGTGCCTCTTCGGGGGAAGATTCGAAAGGCTTGTCTTTGGGTTCGGCAGCGCATGTCACAGTGGGCAATTCACTTCCTTCTTCTTCGTCACTACAGCAACGGTTGAGGATGCCCCATGAAGACCCCATTTCTTCTTCAGCAAGGTTCGGTGATCACAAAGGCGGAACCGGGACTTCTCTGCTGTTTGATTTGGATCCTTCCTTGCAGTATCATCAGTAG	1392	0.5187	MDLIQQVKGTYSDSREEEEEEEVTEIIGITREAESSRLHHQDAASNFGKKLDLMELSLGSSKEEEGDGNLQGGGGGGPVHHHHHHHHHQQQQQQHEHHHHHDGHGTCSNAKEVVEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSNEKGLLLNFEDRNGKVWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGLGDMYRHRLYIDWRRRTDHGHPPSDPSASPLFLPSIRWYSLPATSPIVPPRYHHDHHFHHLNYNNLFTFQHQHQYLGHAHAHGAATSAAAAAAAHHHNNYGEHNSGSGTGSLYYLRSSMPMGGGADQNLAGRGNSIVPMIIDSVPVNVGHHNHRHGHGGMSSGGGSSTTSSGKRLRLFGVNMECASSGEDSKGLSLGSAAHVTVGNSLPSSSSLQQRLRMPHEDPISSSARFGDHKGGTGTSLLFDLDPSLQYHQ*	464

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Vra5g0038	463	MobiDBLite	consensus disorder prediction	360	380	-	-
Vra5g0038	463	PANTHER	B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR NGA2	83	405	-	-
Vra5g0038	463	Gene3D	-	113	230	IPR015300	-
Vra5g0038	463	CDD	B3_DNA	118	207	IPR003340	GO:0003677
Vra5g0038	463	SMART	B3_2	120	225	IPR003340	GO:0003677
Vra5g0038	463	Pfam	B3 DNA binding domain	120	224	IPR003340	GO:0003677
Vra5g0038	463	ProSiteProfiles	B3 DNA-binding domain profile.	120	225	IPR003340	GO:0003677
Vra5g0038	463	MobiDBLite	consensus disorder prediction	78	94	-	-
Vra5g0038	463	MobiDBLite	consensus disorder prediction	60	107	-	-
Vra5g0038	463	MobiDBLite	consensus disorder prediction	414	463	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra5g0038	Vra-Chr5	317000	320218	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vra5g0038	110	396	RAV Transcription Factor Family	AT2G46870	50.512	7.41e-77	241

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	B3	Vra5g0038		B3	4e-29	CL0405

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra5g0038	-		-	vun:114162133	711.449

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