Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0038 ATGGACTTGATACAACAAGTTAAAGGCACTTATTCTGATAGCAGGGAGGAAGAGGAGGAAGAGGAAGTGACAGAGATTATTGGTATCACAAGAGAAGCAGAAAGCAGCAGGTTACACCACCAAGATGCCGCATCCAATTTTGGAAAGAAGCTAGACCTCATGGAGTTGTCACTGGGGAGCAGCAAGGAAGAGGAAGGGGACGGCAATTTGCAAGGCGGAGGAGGAGGAGGACCGGTTCATCATCATCATCATCACCATCATCACCAGCAGCAGCAGCAGCAGCATGAACATCATCATCATCATGACGGTCACGGAACTTGTTCAAACGCCAAGGAAGTAGTGGAGAAAGAGCACATGTTTGACAAAGTGGTGACACCGAGCGATGTGGGGAAGCTGAACAGGCTGGTGATACCGAAGCAGCACGCGGAGAAGTACTTCCCCCTTGATTCGTCGTCGAACGAGAAGGGTCTGCTCCTGAATTTCGAAGACCGGAATGGGAAGGTGTGGCGGTTCAGATATTCGTATTGGAACAGCAGCCAGAGCTATGTGATGACAAAAGGGTGGAGCCGTTTCGTGAAGGAGAAGAAGCTGGATGCAGGTGACATTGTTTCCTTCCAGCGTGGCCTTGGAGATATGTATAGACATAGGTTGTACATAGATTGGAGGAGAAGGACTGATCATGGCCATCCTCCCTCTGATCCCTCCGCCTCCCCTTTGTTTCTTCCCTCTATCAGATGGTACTCCCTTCCCGCCACCTCCCCCATCGTTCCACCCCGCTACCACCACGATCATCACTTTCACCATCTCAATTACAACAACCTCTTCACTTTCCAGCACCAACACCAGTACCTTGGTCATGCTCATGCTCACGGTGCTGCCACTTCCGCCGCCGCCGCTGCCGCCGCCCATCATCACAACAACTATGGCGAGCATAATTCGGGATCTGGGACCGGCTCACTCTATTACCTCAGGTCCTCCATGCCAATGGGTGGTGGTGCTGATCAAAACTTGGCAGGCAGAGGGAATAGCATTGTGCCCATGATCATCGACTCGGTGCCGGTGAACGTGGGTCATCATAACCATCGGCATGGGCACGGTGGCATGTCGAGTGGCGGAGGTAGTTCTACCACAAGTAGTGGAAAACGACTGAGGCTATTTGGGGTGAACATGGAGTGTGCCTCTTCGGGGGAAGATTCGAAAGGCTTGTCTTTGGGTTCGGCAGCGCATGTCACAGTGGGCAATTCACTTCCTTCTTCTTCGTCACTACAGCAACGGTTGAGGATGCCCCATGAAGACCCCATTTCTTCTTCAGCAAGGTTCGGTGATCACAAAGGCGGAACCGGGACTTCTCTGCTGTTTGATTTGGATCCTTCCTTGCAGTATCATCAGTAG 1392 0.5187 MDLIQQVKGTYSDSREEEEEEEVTEIIGITREAESSRLHHQDAASNFGKKLDLMELSLGSSKEEEGDGNLQGGGGGGPVHHHHHHHHHQQQQQQHEHHHHHDGHGTCSNAKEVVEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSNEKGLLLNFEDRNGKVWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGLGDMYRHRLYIDWRRRTDHGHPPSDPSASPLFLPSIRWYSLPATSPIVPPRYHHDHHFHHLNYNNLFTFQHQHQYLGHAHAHGAATSAAAAAAAHHHNNYGEHNSGSGTGSLYYLRSSMPMGGGADQNLAGRGNSIVPMIIDSVPVNVGHHNHRHGHGGMSSGGGSSTTSSGKRLRLFGVNMECASSGEDSKGLSLGSAAHVTVGNSLPSSSSLQQRLRMPHEDPISSSARFGDHKGGTGTSLLFDLDPSLQYHQ* 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0038 463 MobiDBLite consensus disorder prediction 360 380 - -
Vra5g0038 463 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR NGA2 83 405 - -
Vra5g0038 463 Gene3D - 113 230 IPR015300 -
Vra5g0038 463 CDD B3_DNA 118 207 IPR003340 GO:0003677
Vra5g0038 463 SMART B3_2 120 225 IPR003340 GO:0003677
Vra5g0038 463 Pfam B3 DNA binding domain 120 224 IPR003340 GO:0003677
Vra5g0038 463 ProSiteProfiles B3 DNA-binding domain profile. 120 225 IPR003340 GO:0003677
Vra5g0038 463 MobiDBLite consensus disorder prediction 78 94 - -
Vra5g0038 463 MobiDBLite consensus disorder prediction 60 107 - -
Vra5g0038 463 MobiDBLite consensus disorder prediction 414 463 - -
Vra5g0038 463 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 83 405 IPR044800 GO:0003700
Vra5g0038 463 MobiDBLite consensus disorder prediction 1 22 - -
Vra5g0038 463 SUPERFAMILY DNA-binding pseudobarrel domain 117 222 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0038 Vra-Chr5 317000 320218 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0038 110 396 RAV Transcription Factor Family AT2G46870 50.512 7.41e-77 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vra5g0038 B3 4e-29 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0038 - - vun:114162133 711.449