Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0037 ATGGCTTCTGCTTGTGCCTCCTCTGCCATTGCTGCTGTTTCCATCTCCACGCCAAGTTCCCAGAAGAATGGATCAGTGTTGGGAACCCCCAAAGCTTCTTTTCTTGGTGGAAGGAAATTGAGGGTGAACAAATACACAGCAGCAGTTGGAGGACGATCCACCACTACAGTGTGTGCCGTAGCAGACCCTGACAGACCCCTATGGTTTCCCGGCAGCACCCCTCCTCCATGGCTTGACGGCAGTCTCCCTGGAGACTTTGGCTTTGACCCTCTTGGTCTTGGATCTGATCCGGAGAGTCTGAGATGGAATGTTCAGGCAGAGCTAGTGCACTCCAGATGGGCAATGTTGGGTGCTGCTGGGATTTTCATTCCAGAATTCCTGACAAAGATTGGTGTTTTAAACACACCCTCATGGTACTCAGCTGGAGAACTTGAATACTTCACAGACACCACTACCCTCTTCATTGTTGAGCTCTTTTTCATTGGGTGGGCTGAGGGTAGAAGGTGGGCTGACATAATCAAGCCAGGGTGTGTGAACACTGACCCCATCTTTCCCAACAACAAGCTCACAGGAACTGATGTTGGTTACCCAGGTGGGCTTTGGTTTGACCCCCTTGGATGGGGAAGTGGTTCTCCCGAGAAGATCAAGGAGTTGAGAACTAAGGAGATCAAGAATGGGAGATTGGCCATGTTGGCTGTGATTGGTGCATGGTTCCAGCACATATACACTGGAACTGGTCCTATTGACAACCTCTTTGCCCACCTTGCAGATCCTGGCCATGCTACCATTTTTGCTGCTTTCACCCCTAAGTGA 813 0.5055 MASACASSAIAAVSISTPSSQKNGSVLGTPKASFLGGRKLRVNKYTAAVGGRSTTTVCAVADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKIGVLNTPSWYSAGELEYFTDTTTLFIVELFFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVIGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAFTPK* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0037 270 Gene3D Chlorophyll a/b binding protein domain 75 260 - -
Vra5g0037 270 SUPERFAMILY Chlorophyll a-b binding protein 60 268 - -
Vra5g0037 270 Pfam Chlorophyll A-B binding protein 74 240 IPR022796 -
Vra5g0037 270 PANTHER CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC-RELATED 1 269 - -
Vra5g0037 270 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 269 IPR001344 GO:0009765|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0037 Vra-Chr5 307580 309111 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0037 52 270 Chloroplast and Mitochondria Gene Families AT3G61470 88.636 3.59e-145 405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0037 K08908 - gmx:100784089 525.398