Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0031 ATGGTGGAGTTTAGAAGGTTGTTACTGTTGCTGTGCATCACTTCCTGCATTCTTTGTTGGATGCCCAATGGTGCTACTTCTGCTACAGATCCAAATGATGCTGCTGCTGTGAGACTTTTATTTCAAAATTTGAACTCACCATCCCAACTTGGTTGGCCTGTTAATGGCGATGATCCATGTGGGCAACCTTGGAAAGGCATTTCTTGCTCAGGCAACCGTGTTACAGAGATTAAGTTATCTAATCTTGGACTGACTGGGTCGTTGCCTTATGGATTAGAAAGCTTGACATCTTTGAGCACCCTAGACATGAGTGGCAACAGTCTTGGCGGCAGCATACCATACCAGCTCCCTCCATATGTGCAGCGATTAAATCTTGCTTATAATAACATCACAGGGACTGTTCCTTACTCTATTTCAAACTTGACAGCTCTTACAGACCTGAATCTTGGTCATAATCAGCTCCAGCAAGGACTGGCTGTTAACTTTCTTAATCTTTCTACCCTCTCCACATTGGATCTCTCTTTCAATTCTCTAATCGGTGACCTCCCTCAGACTATGAGCTCACTTTCACACATAACAACCTTGAATCTGCAAAACAATCAGTTTACGGGCAGTATTGATGTCCTTGCTAATCTTCCTCTGGATAATCTGAATGTGGAGAACAATAATTTTACTGGATGGATACCCGAACAGTTGAAGGATATAAACCTACAGAGCGGTGGTAATGGATGGAGCTCCGGATCTGCACCCCCACCTCCTCCTGGTACACCTCCCATACCTAAAAGGAACAAACACCACCAGTCTGGAGGGGGAAGCACCACCACCCCAGATGTCGGTGACAGCAGCAGCAGCTCAGTTGACATGGGCAAAAAGTCCAGTATAGGAGGTGGTGCCATTGCTGGAATTGTAGTCTCTGTCATAGTTGTTGGGGCAATAGTAGCGTTCTTTCTGGTGAAGAGAAAATCCAAGAAGACATCTTCAGATTTAGAAAAGCTGGACAATCAATCCTTTGCTCCACTTCCCTCAAATGGAGTGCATGAAGAGAAGTCAGAGCAAACATCCTCTGTATCAGACATGAAGACGTTTGATACTTCTGCCTCAATAAATCTTAAACCCCCACCTATTGATCGACATAAATCATTTGATGATGAAGAGTTCTCCAAGAAGCCCACAATTGTGAAGAAGACTGTAACAGCTCCTGCAAATGTGAAATCATATTCTATTGCTGACCTGCAGATTGCTACTGGTAGCTTCAGTGTGGATCATCTTGTTGGCGAGGGGTCTTTTGGGCGTGTGTACCGTGCTCAATTTGATGATGGAGAGGTTCTTGCAGTGAAGAAGATAGATTCATCTGTCCTTTCCAATGATTTGTCAGATGATTTTATAGAAATAATTTCAAACATCTCCAGCTTGCATCATCCAAATGTGACAGAGCTTGTAGGTTATTGCTCAGAGTATGGACAACACCTCTTGGTCTACAAATTTCATAAAAATGGATCATTGCACGACTTCCTTCATCTACCAGACGAATATAGTAAACCACTGATATGGAATTCCCGTGTCAAGATTGCTTTGGGTACTGCACGTGCTTTAGAGTACCTACATGAAGTTAGTTCGCCATCAGTTGTTCATAAGAATATTAAATCTGCCAACATATTACTTGATGCAGAGCTTAATCCTCATCTTTCAGATAGTGGATTGGCTAGCTATATTCCAAACGCAGACCAGATATTGAGTCATAATGTTGGATCTGGATATGATGCCCCTGAAGTTGCGTTGTCTGGTCAGTATACTCTGCAAAGTGATGTCTACAGCTTTGGGGTTGTCATGTTGGAACTTCTCAGCGGACGGATGCCATTTGATAGCTCAAGGCCAAGATCTGAGCAGTCTTTGGTTCGATGGGCAACACCTCAACTCCATGATATTGATGCATTGGGTAAAATGGTTGATCCTACATTGAAGGGGCTATATCCTGTTAAGTCTCTTTCTCGATTTGCTGATGTTATCGCCCTTTGCGTGCAGCCGGAGCCTGAATTCCGACCACCAATGTCAGAAGTGGTTCAAGCACTGGTGCGATTAGTGCAGCGAGCTAACATGAGCAAGCGCACATTTAGCAGTAGTGATCATGGAGGATCACAACGAGGAAGTGATGAGGCAGCTCTACGGGAGATCTAA 2175 0.4386 MVEFRRLLLLLCITSCILCWMPNGATSATDPNDAAAVRLLFQNLNSPSQLGWPVNGDDPCGQPWKGISCSGNRVTEIKLSNLGLTGSLPYGLESLTSLSTLDMSGNSLGGSIPYQLPPYVQRLNLAYNNITGTVPYSISNLTALTDLNLGHNQLQQGLAVNFLNLSTLSTLDLSFNSLIGDLPQTMSSLSHITTLNLQNNQFTGSIDVLANLPLDNLNVENNNFTGWIPEQLKDINLQSGGNGWSSGSAPPPPPGTPPIPKRNKHHQSGGGSTTTPDVGDSSSSSVDMGKKSSIGGGAIAGIVVSVIVVGAIVAFFLVKRKSKKTSSDLEKLDNQSFAPLPSNGVHEEKSEQTSSVSDMKTFDTSASINLKPPPIDRHKSFDDEEFSKKPTIVKKTVTAPANVKSYSIADLQIATGSFSVDHLVGEGSFGRVYRAQFDDGEVLAVKKIDSSVLSNDLSDDFIEIISNISSLHHPNVTELVGYCSEYGQHLLVYKFHKNGSLHDFLHLPDEYSKPLIWNSRVKIALGTARALEYLHEVSSPSVVHKNIKSANILLDAELNPHLSDSGLASYIPNADQILSHNVGSGYDAPEVALSGQYTLQSDVYSFGVVMLELLSGRMPFDSSRPRSEQSLVRWATPQLHDIDALGKMVDPTLKGLYPVKSLSRFADVIALCVQPEPEFRPPMSEVVQALVRLVQRANMSKRTFSSSDHGGSQRGSDEAALREI* 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0031 724 SUPERFAMILY Protein kinase-like (PK-like) 400 690 IPR011009 -
Vra5g0031 724 PANTHER STRUBBELIG-RECEPTOR FAMILY 6 PROTEIN 23 720 - -
Vra5g0031 724 MobiDBLite consensus disorder prediction 331 359 - -
Vra5g0031 724 ProSitePatterns Protein kinases ATP-binding region signature. 424 447 IPR017441 GO:0005524
Vra5g0031 724 ProSiteProfiles Leucine-rich repeat profile. 191 213 IPR001611 GO:0005515
Vra5g0031 724 MobiDBLite consensus disorder prediction 239 289 - -
Vra5g0031 724 MobiDBLite consensus disorder prediction 327 359 - -
Vra5g0031 724 Pfam Protein tyrosine and serine/threonine kinase 421 690 IPR001245 GO:0004672|GO:0006468
Vra5g0031 724 SUPERFAMILY L domain-like 29 232 - -
Vra5g0031 724 Gene3D Ribonuclease Inhibitor 35 180 IPR032675 -
Vra5g0031 724 PANTHER OS01G0253100 PROTEIN 23 720 IPR045271 GO:0004714|GO:0006468
Vra5g0031 724 Gene3D Transferase(Phosphotransferase) domain 1 497 712 - -
Vra5g0031 724 Gene3D Phosphorylase Kinase; domain 1 380 495 - -
Vra5g0031 724 Gene3D Ribonuclease Inhibitor 181 245 IPR032675 -
Vra5g0031 724 MobiDBLite consensus disorder prediction 702 724 - -
Vra5g0031 724 MobiDBLite consensus disorder prediction 266 289 - -
Vra5g0031 724 ProSiteProfiles Protein kinase domain profile. 418 693 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0031 Vra-Chr5 261663 269773 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0031 13 703 Strubbelig Receptor Gene Family AT1G53730 64.900 0.0 826
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Vra5g0031 PK_Tyr_Ser-Thr 6.3e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0031 - - gmx:100807707 1189.87