Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0028 ATGAGTGAGCAAACTGACACTCTGGGTGAATCCCCCGCCGTTGCGTTAATCGGAAAGATAATGATAATCGTTATAATAATCTTCTTCTTCCTTGTTGTAATTGCTCTCGGCGTTCATCTCTTCACAAGAAACTTCTGGTGGCGCGAGCCTGCTCCCCAATCACGGCGCCGCCGCCGCTTTGTGTTTTCCTCCGGTCAAGAGGGTGGTCTTCGAAGGGGACTGGATCCCTCCGTTCTGAACTCCATACCCGTGTTGGTATTCCAAGCCCAAGACTTAAAGGAGGGTTTGGAATGTGCGGTTTGTCTCTCGGAGGTGGTGGAAGGAGAAAAGGCCAGGCTTTTGCCTAAATGCAATCATGGGTTTCACGTTGATTGTATTGACATGTGGTTCCAATCCCATTCTACCTGCCCTCTTTGCAGGAACTCTGTTGCTGTACAATCCGATGAAAATAACAGTGCACAGAACTCAGAATCAGAGTCTCCGACTTTTCCCACTAACGTCTTGGTTTGGGGGGATCACAACCAAATAACTTCTACTGGTGGTGGTTCTTTGGAGGAAGGTGCTTCTCAGCCACCTTGCCCCTCCTCATCCTCTTCCGCTGCTACTTGCAATGATGATGATAGTAACATCAGTAATAGACATGGCGGAACCTTGGTTATTGACATACCAAGTGATATCACTTCGACTTCTTTGTCGCCTTCTGCAAGCAGGTTTGCTGAAGATGACTTGAAATCGCCAATGACGGGAAGACTGAGATCATTGAAGAGGCTTTTGAGCAGAGACAGAAAAAATCCTTGGAGTCCTACTTCTGTAGATGTAGAACAAGCAGCTAATTCAGGGGGAGGGACACAGCTGAGTTAG 861 0.4774 MSEQTDTLGESPAVALIGKIMIIVIIIFFFLVVIALGVHLFTRNFWWREPAPQSRRRRRFVFSSGQEGGLRRGLDPSVLNSIPVLVFQAQDLKEGLECAVCLSEVVEGEKARLLPKCNHGFHVDCIDMWFQSHSTCPLCRNSVAVQSDENNSAQNSESESPTFPTNVLVWGDHNQITSTGGGSLEEGASQPPCPSSSSSAATCNDDDSNISNRHGGTLVIDIPSDITSTSLSPSASRFAEDDLKSPMTGRLRSLKRLLSRDRKNPWSPTSVDVEQAANSGGGTQLS* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0028 286 CDD RING-H2_EL5_like 97 140 - -
Vra5g0028 286 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 3 267 IPR044675 -
Vra5g0028 286 MobiDBLite consensus disorder prediction 222 236 - -
Vra5g0028 286 SUPERFAMILY RING/U-box 78 146 - -
Vra5g0028 286 MobiDBLite consensus disorder prediction 243 262 - -
Vra5g0028 286 PANTHER RING-H2 FINGER PROTEIN ATL3 3 267 - -
Vra5g0028 286 MobiDBLite consensus disorder prediction 174 286 - -
Vra5g0028 286 SMART ring_2 98 139 IPR001841 -
Vra5g0028 286 MobiDBLite consensus disorder prediction 174 215 - -
Vra5g0028 286 MobiDBLite consensus disorder prediction 263 286 - -
Vra5g0028 286 Pfam Ring finger domain 97 140 IPR001841 -
Vra5g0028 286 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 145 IPR013083 -
Vra5g0028 286 ProSiteProfiles Zinc finger RING-type profile. 98 140 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0028 Vra-Chr5 250116 252067 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0028 17 264 C3H Transcription Factor Family AT1G53820 42.761 2.19e-63 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0028 - - gmx:100797420 301.597