Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0026 ATGACCAACCGAATAAAAACAGCTCTTCCCGCTATTTCGGATGCCCTCACCAAGACCAAGACCAAGACCAAACTCTTGTTTGCTGTCGCTGCCACTCTTCTTGTCGCCCTCGCCGTCGTCGCCGGAGTCAGCTCTCGCAAGAACTCCGGCGACAATGCCTCCTCCTCCAGTTCGTCTCACGCCATCATCAAAAGTGCCTGCAGCAGCACCCTGTACCCGGAGTTGTGCTTCTCAAGCATAGCCTCTGAACCCGGCCTGGCCGACAAAATTTCCACCCACAAGAACGTGATAGAGCAGACGCTGAACATAACCGCTGGAGTCGTTGAGCGGAATTACTTTGCCGTGCAGAAGCTCTTAAACGTAAAGGGCCTGACCAAGAGGCAGAAAACGGCCCTCCACGATTGCTTGGAAACCATTGACGAGACCTTGGACGAGCTCCACAAGGCCATAGATGAACTCAAAGACTACCCCTCCAAGAAGCCTCTGTCGCACCACGCCGAGGATCTCAAAACTCTCATCAGTTCGGCCATAACCAACCATGAGACTTGCCTCGACGGGTTCTCTCACGACCAGGCCGATAAAAGACTGAGGAAGCGTTTCCAGGCAGGCGAGGTGCACGCCGAGCACTTGTGCAGCAACGCATTGGCCATGACAAAGAACCTCACTGACACCGACATGGCCATGGCCATGCACAACGACGACAAAAACGACCACAGGAAAACCATGGAGGAGGACCCCCATGAAATCGTGTGGCCCCACTGGATTTCTGCCGCCGACCGCCGCCTTCTGCAGACGGGTACGGTCAGTCCTGACGTGGTAGTGGCCGCGGACGGCAGCGGGAACTTCAGGACGGTGTCGGCAGCGGTGGCTGCGGCTCCTGAGAGTAGTAGTAAGAGATACGTGATCAGGATCAAAGCAGGTGTGTACAGAGAGAACGTGGATGTGCCGAAAAAGAAAACTAACATAATGTTCCTTGGGGATGGCAGGACCAACACCATCATCACAGCTAGTAGAAACGTTGTAGACGGCAGCACCACCTTCAATTCTGCCACAGTTGCCGTGGTGGGTGAAAGATTCTTGGCAAGAGACATAACCTTCCAAAACACAGCTGGTCCCTCAAAGCACCAAGCGGTTGCTCTCAGAGTTGGTGCTGACCTCTCAGCATTCTACAGGTGCGACTTTCTTGCATACCAAGACACCCTTTACGTCCACAGCAACCGCCAATTCTTTATCAGTTGCTACGTAGCAGGCTCCGTCGACTTCATCTTCGGTAACTCTGCGGCTGTCATCCAGAACTCCGACATCCACGCTAGGCGTCCTAATCCTGGGCAGAAGAACATGGTCACCGCTCAGGGCCGCGTTGACCCCAACCAAAACACCGGCATTGTCATTCAGAAAAGCAGGATTGGTGCAACCAAAGACTTGGAATCTGTCAAGAGCAGCTTCCCCACGTTTCTCGGGAGGCCATGGAAGGAGTACTCTCGTACTGTCATCATGCAGTCAACCATAAGTGACGTCATTGATCCTGCTGGGTGGCACGAGTGGAATGGGAACTTTGCTTTGAACACGTTGTTCTACGGGGAGTATCAGAACTCTGGGCCTGGTGCTGCAACCTCAAGGAGGGTCACTTGGAAAGGGTTTAAGGTCATCACCAGTGCTGCTGAGGCTCAGCGCTTCACTCCTGCCAATTTCATTGCAGGTTCAAGCTGGTTGCCCTCTACTGGCTTCCCATTCTCTCTTCGCCTCTAG 1749 0.538 MTNRIKTALPAISDALTKTKTKTKLLFAVAATLLVALAVVAGVSSRKNSGDNASSSSSSHAIIKSACSSTLYPELCFSSIASEPGLADKISTHKNVIEQTLNITAGVVERNYFAVQKLLNVKGLTKRQKTALHDCLETIDETLDELHKAIDELKDYPSKKPLSHHAEDLKTLISSAITNHETCLDGFSHDQADKRLRKRFQAGEVHAEHLCSNALAMTKNLTDTDMAMAMHNDDKNDHRKTMEEDPHEIVWPHWISAADRRLLQTGTVSPDVVVAADGSGNFRTVSAAVAAAPESSSKRYVIRIKAGVYRENVDVPKKKTNIMFLGDGRTNTIITASRNVVDGSTTFNSATVAVVGERFLARDITFQNTAGPSKHQAVALRVGADLSAFYRCDFLAYQDTLYVHSNRQFFISCYVAGSVDFIFGNSAAVIQNSDIHARRPNPGQKNMVTAQGRVDPNQNTGIVIQKSRIGATKDLESVKSSFPTFLGRPWKEYSRTVIMQSTISDVIDPAGWHEWNGNFALNTLFYGEYQNSGPGAATSRRVTWKGFKVITSAAEAQRFTPANFIAGSSWLPSTGFPFSLRL* 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0026 582 SMART PMEI_2 58 217 IPR006501 GO:0004857
Vra5g0026 582 PANTHER PECTINESTERASE 21 580 - -
Vra5g0026 582 ProSitePatterns Pectinesterase signature 2. 415 424 IPR033131 -
Vra5g0026 582 ProSitePatterns Pectinesterase signature 1. 296 315 IPR018040 -
Vra5g0026 582 CDD PMEI-like_3 65 222 - -
Vra5g0026 582 Pfam Plant invertase/pectin methylesterase inhibitor 62 217 IPR006501 GO:0004857
Vra5g0026 582 Gene3D Invertase/pectin methylesterase inhibitor family protein 58 223 IPR035513 -
Vra5g0026 582 Pfam Pectinesterase 271 567 IPR000070 GO:0030599|GO:0042545
Vra5g0026 582 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 62 222 IPR035513 -
Vra5g0026 582 PANTHER PECTINESTERASE 21 580 - -
Vra5g0026 582 Coils Coil 136 156 - -
Vra5g0026 582 TIGRFAM PME_inhib: pectinesterase inhibitor domain 35 222 IPR006501 GO:0004857
Vra5g0026 582 SUPERFAMILY Pectin lyase-like 267 580 IPR011050 -
Vra5g0026 582 Gene3D - 265 582 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0026 Vra-Chr5 237717 240944 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0026 56 582 Carbohydrate Esterase AT3G14310 68.508 0.0 766
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0026 K01051 - jre:109013060 795.038