Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0021 ATGTGTGGAGGAGCTATTATCTCTGACTTCATTCCGGCGGCGGTCACTGCCAGGTCTCGCCGGATCACCGCCGGTTACCTGTGGTCGGATTTGAAGAAACGGACATCTGAGGTCATCCACTCGGACGATGACTTCGAGGCTGATTTTAGGGATTTCAAGGACGATTCCGACATCGAAACCGACGTCGACTCCGACCACCAAGTCAAACCCTTTGCTTTCTCTGCCTCTTCTCAGCGGGCAGTGAAATCTGTGGCATTCAATGGTGGAGCTGAAAAGTCTGCAAAGAGAAAGAGGAAGAATCAATATAGGGGAATTCGTCAACGTCCTTGGGGGAAATGGGCAGCTGAAATCAGGGACCCAAGAAAGGGCGTTCGTGTCTGGCTTGGAACCTTCAACACTGCTGAAGAAGCAGCAAGAGCTTATGATGCTGAAGCACGGAGGATTCGTGGCAATAAAGCCAAGGTGAATTTCCCTGAAGAAGCTTCCGTGAAACGTTCCAAGTTAAATACACTGGGAAATCGGAAGATTGTTCAACCCAATGTTCACAAGCTCAATGCTGGGAACAATCAGAACGACCTTCGTTGGCCTATGGATCTGGTGGAACAGAAACCCCTAGTTAATCAGTTTGCTGACATGGGTTCCTTCCCCGGCAGTGGAAATGGGCTCAGATCCCTGCCTTCGACTGATAATGTGACCCTTCACTTCAGTTCAGATCAGGGGAGTAACTCATTTGATTGTGCAGATATTGGGTGGAGTGAAAAGGCTCCCAAAACTCCTGAGATCTCATCCATGCTTTCTGCTCCTTTGGTTTGCGATTCTCATTTTGCACAGGATGCCACCCATCAGACTAACTCTCAGGATGTGGTATCTATGCAAGATGATTCTTCCAAGACACTCTCTGAGGAGCTTGTGGATATTGAATCTGAGTTGAAGTTTTTTCAGATGCCTTATCTTGAAGGGAGCTGGGACGATACTTCATTGGAATCCTTGCTATCTTGTGATACAACCCAGGATGGTGGAAACCTGATGAACCTTTGGAGCTTTGATGACATTCCTTCCATGGCTGGCGGAGTTTTCTGA 1080 0.4806 MCGGAIISDFIPAAVTARSRRITAGYLWSDLKKRTSEVIHSDDDFEADFRDFKDDSDIETDVDSDHQVKPFAFSASSQRAVKSVAFNGGAEKSAKRKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDAEARRIRGNKAKVNFPEEASVKRSKLNTLGNRKIVQPNVHKLNAGNNQNDLRWPMDLVEQKPLVNQFADMGSFPGSGNGLRSLPSTDNVTLHFSSDQGSNSFDCADIGWSEKAPKTPEISSMLSAPLVCDSHFAQDATHQTNSQDVVSMQDDSSKTLSEELVDIESELKFFQMPYLEGSWDDTSLESLLSCDTTQDGGNLMNLWSFDDIPSMAGGVF* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0021 359 PANTHER EREBP TRANSCRIPTION FACTOR 1 353 - -
Vra5g0021 359 ProSiteProfiles AP2/ERF domain profile. 101 158 IPR001471 GO:0003700|GO:0006355
Vra5g0021 359 Pfam AP2 domain 101 150 IPR001471 GO:0003700|GO:0006355
Vra5g0021 359 SMART rav1_2 101 164 IPR001471 GO:0003700|GO:0006355
Vra5g0021 359 PRINTS Ethylene responsive element binding protein signature 102 113 IPR001471 GO:0003700|GO:0006355
Vra5g0021 359 PRINTS Ethylene responsive element binding protein signature 124 140 IPR001471 GO:0003700|GO:0006355
Vra5g0021 359 PANTHER DNA-BINDING DOMAIN 1 353 IPR044808 GO:0003700|GO:0009873
Vra5g0021 359 Gene3D AP2/ERF domain 100 160 IPR036955 GO:0003700|GO:0006355
Vra5g0021 359 SUPERFAMILY DNA-binding domain 101 159 IPR016177 GO:0003677
Vra5g0021 359 CDD AP2 101 159 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0021 Vra-Chr5 217527 219722 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0021 1 359 AP2-EREBP Transcription Factor Family AT1G53910 45.823 5.11e-71 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vra5g0021 AP2 7.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0021 K09286 - gmx:100170723 500.745