Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0018 ATGGCGAAGGAAGGAGAGAAATGCAGTGAGGAGTTGTATAAGGTTCTGGGCATAGAAAAGGAGTGTAGCCCAATTGAGCTCAAGAAAGCCTATAAGAAACTTGCCCTGAGATGGCACCCAGACCGTTGTTCAGGGAGCCGCGAGGAAGAAGGAAAGGAGAAGTTCCAGGCAATCCAGCACGCCTATTCTGTCTTATCGGACGCCAACACAAGGTTACTGTACGACATAGGTGTCTATGACAGCGATGACGACCAAACCGGCATGGGTGATTTCTTGAATGAAATGGCCACAATGATGACTCAATCAAAACCCATTGAAAATGGGGAGGAGAGTTTTGAGGAGTTCCAACAGCTCTTTGAAGAAATGTTTCAAGCCACTGCACCTGCTTCACCTACGTACATCATGACTAATGGTGAAGGTTCTAGATCAAATAAAAGTAATTCCACTGAAATTAATTTTGGAAAGACAGACAATACATCTGAACTCAATTCCAGTGACCAGAACTTCTGTTTAGGGGGAGGTGGAGAAGCTCCAAGATATGGAGAAGGGAATTCCATGAGGAGGAGGTAG 570 0.4526 MAKEGEKCSEELYKVLGIEKECSPIELKKAYKKLALRWHPDRCSGSREEEGKEKFQAIQHAYSVLSDANTRLLYDIGVYDSDDDQTGMGDFLNEMATMMTQSKPIENGEESFEEFQQLFEEMFQATAPASPTYIMTNGEGSRSNKSNSTEINFGKTDNTSELNSSDQNFCLGGGGEAPRYGEGNSMRRR* 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0018 189 Gene3D DnaJ domain 8 132 IPR036869 -
Vra5g0018 189 CDD DnaJ 11 67 IPR001623 -
Vra5g0018 189 MobiDBLite consensus disorder prediction 135 170 - -
Vra5g0018 189 ProSitePatterns Nt-dnaJ domain signature. 55 74 IPR018253 -
Vra5g0018 189 SUPERFAMILY Chaperone J-domain 11 90 IPR036869 -
Vra5g0018 189 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 6 187 - -
Vra5g0018 189 SMART dnaj_3 10 70 IPR001623 -
Vra5g0018 189 ProSiteProfiles dnaJ domain profile. 11 78 IPR001623 -
Vra5g0018 189 MobiDBLite consensus disorder prediction 135 189 - -
Vra5g0018 189 Pfam DnaJ domain 12 75 IPR001623 -
Vra5g0018 189 PANTHER PUTATIVE, EXPRESSED-RELATED 6 187 - -
Vra5g0018 189 PRINTS DnaJ domain signature 13 31 IPR001623 -
Vra5g0018 189 PRINTS DnaJ domain signature 31 46 IPR001623 -
Vra5g0018 189 PRINTS DnaJ domain signature 50 70 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0018 Vra-Chr5 201219 204088 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0018 13 75 C2H2 Transcription Factor Family AT1G74250 48.485 1.47e-13 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0018 - - lja:Lj3g3v2576120.1 209.149