Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g1407 ATGGAGAAACTGAATTTTGTCAAAAATGGGGAGCTCAGATTGCCTCCGGGCTTCCGTTTCCACCCAACCGACGAGGAATTGGTTGTGCAATACTTAAAGCGGAAGGTTTTCTCCTTCCCTTTGCCAGCCTCCGTCATTCCTGAGTTTGATGTTTGCAAGTCTGATCCTTGGGATTTGCCAGGTGATTTAGAGAAAGAGAGGTACTTCTTCAGCACCAAAGAGCCCAAATATCCCAACGGCAACCGCTCCAACAGAGCCACCAGTTCAGGTTACTGGAAGGCCACTGGGTTGGACAAACAAATTTTAACTTCAAAAGGGAACCAAGTAGTGGGAATGAAGAAGACACTTGTTTTCTACAGAGGAAAGCCACCTCATGGATCCAGAACCGATTGGATCATGCATGAGTATCGCCTCCTTAACCCTCCGTCTCAGGTTCCCATGGAAAACTGGGTTCTGTGTCGCATATTTTTGAAGAGGAGAAGTGGTTGTAGAAACGGGGAGGAGAAGGAGATGGAGAGTTTGAGAGGCAGAGTGGATAACCGGAAGGTGGGGAAGTTGAAGATGGTTTTTTATGACTTTTTGGCGCAGAACAAGACTGATTGCTCATCTTCTGCCGGCAGTGGAATTACCCACGAATCAGATGAGAATGAAGAGAGTAGTAGCTCCAACACCTTCCCTTATGTTAGAAGAAAACCTTGA 699 0.4664 MEKLNFVKNGELRLPPGFRFHPTDEELVVQYLKRKVFSFPLPASVIPEFDVCKSDPWDLPGDLEKERYFFSTKEPKYPNGNRSNRATSSGYWKATGLDKQILTSKGNQVVGMKKTLVFYRGKPPHGSRTDWIMHEYRLLNPPSQVPMENWVLCRIFLKRRSGCRNGEEKEMESLRGRVDNRKVGKLKMVFYDFLAQNKTDCSSSAGSGITHESDENEESSSSNTFPYVRRKP* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g1407 232 Pfam No apical meristem (NAM) protein 15 138 IPR003441 GO:0003677|GO:0006355
Vra4g1407 232 MobiDBLite consensus disorder prediction 199 232 - -
Vra4g1407 232 Gene3D NAC domain 23 163 IPR036093 GO:0003677|GO:0006355
Vra4g1407 232 SUPERFAMILY NAC domain 10 158 IPR036093 GO:0003677|GO:0006355
Vra4g1407 232 ProSiteProfiles NAC domain profile. 14 158 IPR003441 GO:0003677|GO:0006355
Vra4g1407 232 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 1 231 - -
Vra4g1407 232 PANTHER NAC DOMAIN-CONTAINING PROTEIN 83-LIKE 1 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g1407 Vra-Chr4 20755995 20757350 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g1407 1 225 NAC Transcription Factor Family AT5G13180 59.363 8.74e-100 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vra4g1407 NAM 2.4e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g1407 - - var:108321729 468.774