Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g1406 ATGGAGAAACTGAATTTTGTGAAGAATGGGGAGCTCCGATTGCCTCCGGGCTTCCGTTTCCACCCAACCGACGAGGAATTGGTTGTGCAATACTTAAAGCGCAAGGTTTTCTCCTTCCCTTTGCCAGCCTCCGTCATTCCTGAGTTTGATGTTTGCAAGTCTGATCCTTGGGATTTGCCAGGTGATTTAGAGAAAGAGAAGTACTTCTTCAGCACCAAAGAACCCAAATATCCTAACGGCAATCGCTCCAACAGAGCCACCAGTTCAGGTTACTGGAAGGCCACTGGGTTGGACAAACAAATTTTAACTTCAAAAGGGAACCAANTAGTGGGAATGAAGAAGACACTTGTTTTCTACAGAGGAAAGCCACCTCATGGATCCAGAACCGATTGGATCATGCATGAGTATCGCCTNCTTAACGCTCCATCTCAGGTTCCCATGGAAAACTGGGTTCTGTGTCGCATATTTTTGAAGAGGAGAAGTGGTTGTAGAAACGTGGAGGAGAAGGAGATGGAGAGTTTGAGAGGCGGAGTGAATAATAGGAAGGTGAGGAAGTCGAAGATGGTTTTCTATAACTTTTTGGAACAGAGCAAGACTGATTCCTCATCTTCTGCCGGCAGTGGAATTACCCATGAATCAGATGAGCATGAAGAGAGCAGTAGCTCCGACACCTTCCCTTATTTTAGAAGAAAACCTTGA 699 0.4549 MEKLNFVKNGELRLPPGFRFHPTDEELVVQYLKRKVFSFPLPASVIPEFDVCKSDPWDLPGDLEKEKYFFSTKEPKYPNGNRSNRATSSGYWKATGLDKQILTSKGNQXVGMKKTLVFYRGKPPHGSRTDWIMHEYRLLNAPSQVPMENWVLCRIFLKRRSGCRNVEEKEMESLRGGVNNRKVRKSKMVFYNFLEQSKTDSSSSAGSGITHESDEHEESSSSDTFPYFRRKP* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g1406 232 MobiDBLite consensus disorder prediction 198 232 - -
Vra4g1406 232 PANTHER NAC DOMAIN-CONTAINING PROTEIN 83-LIKE 1 231 - -
Vra4g1406 232 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 1 231 - -
Vra4g1406 232 SUPERFAMILY NAC domain 10 158 IPR036093 GO:0003677|GO:0006355
Vra4g1406 232 Gene3D NAC domain 23 164 IPR036093 GO:0003677|GO:0006355
Vra4g1406 232 MobiDBLite consensus disorder prediction 210 232 - -
Vra4g1406 232 Pfam No apical meristem (NAM) protein 15 138 IPR003441 GO:0003677|GO:0006355
Vra4g1406 232 ProSiteProfiles NAC domain profile. 14 158 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g1406 Vra-Chr4 20749586 20750995 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g1406 1 225 NAC Transcription Factor Family AT5G13180 58.167 2.35e-98 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vra4g1406 NAM 5.2e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g1406 - - var:108321729 427.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g1406 4 20749586 20750995 Vra4g1406 4 20749586 20750995 ECH
Vra4g1406 4 20749586 20750995 Vra7g3445 7 53773846 53775075 ECH