Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g1403 ATGGGTTGCTTTTCCTGTTTCGATTCGAGTTCAAGTTCGAGGGAGAATCACAACCTCCGTTCTCACCACCACCCACAACCCAATTCCAATTCCAATTCCAATCCCAATCCCAATATCAATCTGTCTCTCCCTTCTCAGATTTCCAAGTTGCCATCTGGAGCAGACAAGTTACGGTCCAGAAGTAATGGAGGTTCCAAAAGGGAATTGCCTGCTTCCAACACCAAGGAAGGACACGGACCCGCCGTCCAAATCGCTGCTCAAACTTTTACTTTCCGTGAACTTGCTGCTGCAACCAAAAACTTTAGGCCAGAATCCTTTGTAGGGGAAGGTGGTTTTGGAAGGGTCTACAAAGGCAGGCTTGAAACCACTGGTCAGATTGTTGCAGTCAAACAGTTAGACAAAAATGGTCTACAGGGTAATCGGGAATTCCTTGTAGAGGTTCTCATGCTCAGTCTTCTGCATCACCCTAACCTTGTGAATCTCATTGGATACTGTGCGGATGGGGAACAACGCCTCCTTGTTTATGAATTTTTGCCTTTGGGATCATTGGAAGATCACCTTCATGATGTTCCCCCTGATAAGGAACCACTAGATTGGAACACCAGAATGAAAATAGCTGCTGGTGCTGCAAAAGGATTAGAATACCTGCATGACAAGGCAAATCCTCCTGTCATTTATAGAGACTTCAAGTCGTCTAACATATTACTTGACGAAACATACCACCCTAAGCTTTCTGACTTTGGTCTTGCGAAGCTTGGTCCTGTTGGTGACAAATCACACGTTTCTACCCGAGTCATGGGAACTTATGGTTACTGTGCTCCTGAGTATGCTATGACTGGACAGCTGACAGTGAAGTCTGATGTATATAGCTTTGGGGTTGTCTTCTTAGAGCTTATTACTGGCCGCAAAGCAATTGACAGCACCCAGCCCCATGGAGAACAGAATCTTGTCACATGGGCACGTCCACTTTTTAACGACCGCAGGAAGTTTTCAAAGTTGGCTGATCCTAGGCTGCAGGGACGGTTTCCCATGCGTGGTCTTTACCAAGCTCTAGCTGTTGCGTCAATGTGCATTCAAGAATCAGCTGCCACACGCCCTCTGATTGGAGATGTGGTGACAGCCCTCTCTTATCTGGCCAACCAGGGATATGACCCCAACAATGCTGGGCATGGTTATAGGGGGTCTAGCGATGACAAAAGGAACAGAGATGATAAAGGTGGAAGAATACTTAAAAATGATGAAGCTGGGGGATCTGGACGCAGATGGGACTTGGAAGGATCCGAGAAAGATGACTCCCCACGAGAAACTGCAAGAATGTTAAATAGAGATCTAGATAGAGAACGTGCTGTGGCTGAAGCCAAGATGTGGGGAGAGAACTTGAGACAAAAAAGACAACAAAGTTTGCAGGAGGGCAGTTATGGTTCTAACTAA 1431 0.4633 MGCFSCFDSSSSSRENHNLRSHHHPQPNSNSNSNPNPNINLSLPSQISKLPSGADKLRSRSNGGSKRELPASNTKEGHGPAVQIAAQTFTFRELAAATKNFRPESFVGEGGFGRVYKGRLETTGQIVAVKQLDKNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGEQRLLVYEFLPLGSLEDHLHDVPPDKEPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDFKSSNILLDETYHPKLSDFGLAKLGPVGDKSHVSTRVMGTYGYCAPEYAMTGQLTVKSDVYSFGVVFLELITGRKAIDSTQPHGEQNLVTWARPLFNDRRKFSKLADPRLQGRFPMRGLYQALAVASMCIQESAATRPLIGDVVTALSYLANQGYDPNNAGHGYRGSSDDKRNRDDKGGRILKNDEAGGSGRRWDLEGSEKDDSPRETARMLNRDLDRERAVAEAKMWGENLRQKRQQSLQEGSYGSN* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g1403 476 MobiDBLite consensus disorder prediction 393 443 - -
Vra4g1403 476 MobiDBLite consensus disorder prediction 23 49 - -
Vra4g1403 476 Gene3D Transferase(Phosphotransferase) domain 1 178 390 - -
Vra4g1403 476 MobiDBLite consensus disorder prediction 1 80 - -
Vra4g1403 476 CDD STKc_IRAK 107 375 - -
Vra4g1403 476 SUPERFAMILY Protein kinase-like (PK-like) 86 373 IPR011009 -
Vra4g1403 476 Pfam Protein kinase domain 104 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g1403 476 Gene3D Phosphorylase Kinase; domain 1 64 177 - -
Vra4g1403 476 MobiDBLite consensus disorder prediction 460 476 - -
Vra4g1403 476 ProSitePatterns Serine/Threonine protein kinases active-site signature. 224 236 IPR008271 GO:0004672|GO:0006468
Vra4g1403 476 ProSiteProfiles Protein kinase domain profile. 101 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g1403 476 ProSitePatterns Protein kinases ATP-binding region signature. 107 130 IPR017441 GO:0005524
Vra4g1403 476 MobiDBLite consensus disorder prediction 385 443 - -
Vra4g1403 476 MobiDBLite consensus disorder prediction 457 476 - -
Vra4g1403 476 PANTHER OS07G0668900 PROTEIN 1 469 - -
Vra4g1403 476 PANTHER SERINE/THREONINE-PROTEIN KINASE PBS1 1 469 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g1403 Vra-Chr4 20720723 20724688 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g1403 84 457 Glycoside Hydrolase AT3G07070 64.171 4.12e-166 473
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Vra4g1403 Pkinase 1.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g1403 K13430 - gmx:100305422 800.816
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g1403 4 20720723 20724688 Vra4g1403 4 20720723 20724688 ECH