Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g1402 ATGAGTGATGTGGAAGAGATGATGAAAAAGAAGGTGGGAAAAGGGCTCATCACCAAAACGTTGGAGCGATGCAAGTGGATAGGACGAGGCAAAAGCAGCATGATGGTGATGAGGAGCAGATCCTGGCCCAGCCGCAAGGGAGCAAAGAAGAGCAGCAGCAGCAGCAACAGCAGTTGTGTGGCACCCGAAGGTTGTTTCTCCGTCTACGTTGGACCACAAATGCAGAGGTTCGTTATCAAGACCGAGTACGCTAATCACCCTTTGTTCAAGATTCTCCTGGAAGAAGCAGAATCCGAGTATGGGTACAGCAGCCAAGGTCCTTTGGCTCTTCCCTGCCACGTTGATATCTTTTACAAGGTGTTGATGGAAATGGAGTATTCTCGTGAAGAACAAGAGGAGCAACATAGACTAACTCGTAAAGCTTCTGCTGGCTGTGTCTGTCTTAACCGCTCTCCCTCCGCTTATCGCCTTCTTCGTTCTTCCTCCGTCAAGCCGTAA 498 0.496 MSDVEEMMKKKVGKGLITKTLERCKWIGRGKSSMMVMRSRSWPSRKGAKKSSSSSNSSCVAPEGCFSVYVGPQMQRFVIKTEYANHPLFKILLEEAESEYGYSSQGPLALPCHVDIFYKVLMEMEYSREEQEEQHRLTRKASAGCVCLNRSPSAYRLLRSSSVKP* 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g1402 165 Pfam Auxin responsive protein 44 121 IPR003676 GO:0009733
Vra4g1402 165 PANTHER SMALL AUXIN-UP RNA-RELATED 12 147 - -
Vra4g1402 165 MobiDBLite consensus disorder prediction 37 59 - -
Vra4g1402 165 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 12 147 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g1402 Vra-Chr4 20717885 20718960 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g1402 50 130 Calmodulin-binding Proteins AT5G20810 40.909 4.98e-19 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g1402 K14488 - gmx:100777217 189.119