Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g1398 ATGTCTATGTATATAAATATATCAAAACCATGCTCACAATTCTCACACGCTCTTCCCTTCTTCGCCACCTTTCGCTTCTCGATTGCTTCCGCCATGTCACACTCTCTCCATTCCTCCGCTTTCAACACACCTAGATTGGTCCTCAAGAAGGTTCTCGCCAAATCTCAACACGAAGGTGACGGAGCTGTTGTTAGAAGAGGCATCGGAAGGACCGAGTTGAAGAATTTGGATCCCTTCCTCATGTTGGATCATTTCTCAGTCTCGCCTCCGGCTGGATTTCCCGATCACCCACACAGAGGTTTTGAAACTGTCACCTACATGTTAGAGGGAGGTATTACTCACCAAGATTTTGCTGGGCACAAGGGTACTATCAGAGCTGGTGATGTTCAGTGGATGACTGCAGGTAGGGGAATAATTCACTCCGAAATGCCCGCAGAAGAAAACAACAAGGGATTGCAATTATGGATCAATTTATCCTCCAGAGACAAAATGATCGAGCCCAACTACCAAGAACTTCCGAGCGAGAATATTCCAACAGCAGAAAGAGATGGGGTTGAAGTGAGAGTGATAGCAGGAGAATCAATGGGAGTGCAATCCCCCGTGTACACACGAACTCCAACCATGTTTCTTGTTTTCTCCATGATGCCAGGAAGTGAGTGGCATCAGAGCATTCCAGAGTCATGGAATTGCTTTGTTTATGTGATTGAAGGAGAAGGGGTTTTCGGGGGTACGAGTTCATCCCCATGTGTGGCACACCATGTGCTTGTTCTTAGTCTAGGTGATGGCCTTAGCGTATGGAACAACTCTTCAAAGCCTCTGAGGTTTGTTGTAATAGGAGGACAACCACTGAACGAGCCAGTGGCTCAGTATGGGCCTTTTGTGATGAACACACAGTCTGAGATTGAGAAAACCCTTGAAGACTACCAATATGGGAGGAATGGTTTTGAAATGAGGAAGTATTGGAGGTCTCAATAG 975 0.4626 MSMYINISKPCSQFSHALPFFATFRFSIASAMSHSLHSSAFNTPRLVLKKVLAKSQHEGDGAVVRRGIGRTELKNLDPFLMLDHFSVSPPAGFPDHPHRGFETVTYMLEGGITHQDFAGHKGTIRAGDVQWMTAGRGIIHSEMPAEENNKGLQLWINLSSRDKMIEPNYQELPSENIPTAERDGVEVRVIAGESMGVQSPVYTRTPTMFLVFSMMPGSEWHQSIPESWNCFVYVIEGEGVFGGTSSSPCVAHHVLVLSLGDGLSVWNNSSKPLRFVVIGGQPLNEPVAQYGPFVMNTQSEIEKTLEDYQYGRNGFEMRKYWRSQ* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g1398 324 Gene3D Jelly Rolls 178 283 IPR014710 -
Vra4g1398 324 SUPERFAMILY RmlC-like cupins 45 322 IPR011051 -
Vra4g1398 324 Pfam Pirin C-terminal cupin domain 210 314 IPR008778 -
Vra4g1398 324 Pfam Pirin 65 156 IPR003829 -
Vra4g1398 324 PIRSF Pirin 43 322 IPR012093 -
Vra4g1398 324 CDD cupin_pirin_C 206 282 - -
Vra4g1398 324 PANTHER PIRIN-LIKE PROTEIN 38 324 - -
Vra4g1398 324 Gene3D Jelly Rolls 58 309 IPR014710 -
Vra4g1398 324 CDD cupin_pirin_N 62 158 - -
Vra4g1398 324 PANTHER PIRIN-RELATED 38 324 IPR012093 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g1398 Vra-Chr4 20692545 20694393 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g1398 42 319 Calmodulin-binding Proteins AT3G59220 65.357 7.58e-135 383