Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g1395 ATGGCTTCATCTTTGGAAGAGCTTCTTGCAGAAGACGGGTTCAAAGGAATCAGAAGAGTGCCAAGGTCTAGATCCTCCTTCCACTATGGTGCTTCAAGTGAACCTCTTTACTCTATGGAAGGTAGACTTTCTGTATCAAGTGAAAGAATTCGACCGCAGAGACAAAAGTCTGATGCCTCAAGATATCAGATTACAAGTGGGCAGCTGAAAACCGACACTCACACTGCAAAGAACCGAAGATCAAGGGATAATTTTATTTTGAGAGGAGAAGTGGATGAACGGTTGGCGGTTGAAGCCCAGAAGAACTCTTCTCGAGATACTGATTCAGAAGCTAGCAGATATGAAGATACTTATTCAAAAGAAGTGTCTGCAAAAGGAGGCAAAGAAAAGAATCTCTATGAACTCGTGGAGGACAGAAACTGGGTGGAAAAGCCTGTCAAGGATGCAAAGGAGCAAAGCAGAAGTTCCAGCATGAACATACGTAGACATTCGAGCGAAACTGGAAAGAAAATAAATCCCCAGAAGAGCTTTGAATACATCAGCAGGAACAAAAGTAGAAATCTTGCCGTGCAAGTAGCTTCTAGTCTTGCCCTTGACGAAGTAGCTGTTCGAGCCGTAGTTTCCATTCTAAATGGGTATATAAATCGTTTTCCAAAGGATGAAGATTTTCGGTCTACATTGCATCACAGATGTTTCTCCTCCTTGAATTTTCGTGAATTGAAAGAAGAGAAAATTACTCAGACCAAAGTCATAAGAAGTCTTGAGCAAGCAATTGAGGCCATTGAACAATCCGTGGAAGAACCTGTATCTGCCATGCATCTGAAAAGAACAACGATGCAGCTTAGTATTATTACAGGTTTGGGTTTAAATGATTTGAAATACGAGTGTACGTGTGGGATTCCGAATTATAAGTTGTCAGCATGTGCTCATCTTTACCTCAGTGTGGTCTACATGATGCAGAAAAAAAATAAGGTGTCAGCAAAGCATCTCTTGCAAGTGTTTTGTGATTCACCCTTTCAGGCACGGACTATGTTGTTGCCTGAACTATGGAAGCGTCTATTTTCTCCACAACTTTCTCATTTGAAGGCATGGTACAAGAAGGAAGAAGGAGTTCTAGTAGACACACCAAACAAAACAAGAAGACTAAAACTTCTTCAAGAGGTGTATAATGAGCATTTGGATTCCGGAACTCATATGTTTTCTGTATATTACAAAGATTGGCTTACTGAAGGAGTGGAATCTCCAACAGTTCCTTCAATTGGCATTCCATCAGTTTCTGTCTCAAGAAGTCAAGAGGGAAGTTCACTTAGTCACTCTTTTGAGTCTGCTAGCTCCATTGACCCATTCTCACCACAGCCAATGGTCAGCAAGAAACTGTATGATTCTATGTTTGGTAGCTTTAGAAGACCAGGAGTTTACCAAGTCAAAGGTGTTAAGGATGATGGTAACCAAGACAACAGCATGAAAGGCTCTTATGGTTCAACATTTGTTGAACATACATTAACATATGAGTCTGAAACTGTTAAATTTACAGATCAAGATATTGAAGGTTTCTCTCAAGGTGTAGCTATTGATACAATCAAGCCTCACAAAGGAAATTCAATGGCAGCTGCAGAAGAAGCAAACATTGTTGTTGCCCTACCATACGAGAAAGCAAATGAACTTGGTCTTAAAAAGCCAAATAAGACAAGTTATGCTCTTCAAGGATCAGATTTTCCAAGCACTCCACGGGAATTTATTTGTTCTCTAACTGGAAATATCTTTGAGGAACCGGTAACCTTAGAGACAGGTCAAACCTTTGAAAGAGAGGCCATCAAAGAATGGTTTGAAAAGGGAAATAGAACATGCCCGGTAACAGGAATTGCCTTGAAATGCATGGCCATTCCATTTACCAACCTTATTTTGAAGCGTTTGATTGATAATTGGAGGTCAGAACGTTTTGATTGCCTTCTTGGTCTTGCTTCCAAAAGAGTGGATAATTCAGAGGATCTCAAGTTGAAAGAAGGGGATGAGGGTGCTGTTTTCAAGTTAGAGAGTCTTTTCTCCTCTCTGAAAGAAGAGGAGAAATCAACTTATGTTAAGCATCTCATGTCTTTAGGATTTCTTCCATTTCTTTTTAGAAGGTTTGAACAGGGAAATGTGGAAGAAAAATCACAAGTGGTGTCACTCTTGCTAAATTGTATTCAAGTAGACTCTGGTTGCATATATAAGATAGCAAGGAATGTTAACAGAAACTGTCTTCTCGAGCTTCTTCACAGCAAGGAGGTTACCCCAACAACAAATGCAATACTATTCCTTACTGAACTTTTATCAATGAAGAGGAGAAAGGATGTTACTGCATTCATGAGTGGCTTGGCGGGTGAAAAAGTATTTTATATAATGCATATTCTGCTCATGTATCTCGAGAATTCTTCTCCAATTGAAAAGCCCCTAATTGCAGTCCTTTTGTTACACTTTGATCTGCTGGTTGAGCCACAAAAGTTTAGTGCATACAGAGAGGTGGCTGTGAATGCCATTGCAGAGGCACTTGATAGCAGCTTAAAAGATGAGATGGCCCGAGAAAAGTGTTGCAGAGCACTTCTAATCTTGTGTGGCCATTTTTCTTCTACCGGAAAGATACCGACCAAGACTAGCACCTTAAAACAAGCAGGTTATAATCATGATGGCATAGAAGTAACCATTTCATCGGTAAGACAAAACATTGTTTATTCCTGTGAAGATGAAGACAAAAGGGTTGAAGAGTTGCTGAAGAAGCTGTTAGAGTCGTTGATTGGTGATGGAGAAGGCCCATTTTTGAAGAGCTTATCGATATGTTTAGATTGTAAGCACCTAGATTTGGTGAGGGCGTGTCTAATAACTGTGACATGGTTGAGTTCTTCACTATCTACACTATTTGGTGCTGGATTGCCTCTTCCCACCTTTTCATCCATCATCTCTCAGTTGAAAGGAATCTTGGAAAATGGAGAACTTGAGCTCAAGGCTCTGGCTTCTTTGTCTTTGCTTAATTTCAGTAAAATATCAGAATGCAAAACGCTTTTGAAGACTATGGCAGAAGATGTTGCCCCCCTTTTTCACGGACTTGCTGAGGCACCATGCACTGCAAAACAACAGCATGCCACTGTTTCTAGAGAGAATTTGTAG 3141 0.4031 MASSLEELLAEDGFKGIRRVPRSRSSFHYGASSEPLYSMEGRLSVSSERIRPQRQKSDASRYQITSGQLKTDTHTAKNRRSRDNFILRGEVDERLAVEAQKNSSRDTDSEASRYEDTYSKEVSAKGGKEKNLYELVEDRNWVEKPVKDAKEQSRSSSMNIRRHSSETGKKINPQKSFEYISRNKSRNLAVQVASSLALDEVAVRAVVSILNGYINRFPKDEDFRSTLHHRCFSSLNFRELKEEKITQTKVIRSLEQAIEAIEQSVEEPVSAMHLKRTTMQLSIITGLGLNDLKYECTCGIPNYKLSACAHLYLSVVYMMQKKNKVSAKHLLQVFCDSPFQARTMLLPELWKRLFSPQLSHLKAWYKKEEGVLVDTPNKTRRLKLLQEVYNEHLDSGTHMFSVYYKDWLTEGVESPTVPSIGIPSVSVSRSQEGSSLSHSFESASSIDPFSPQPMVSKKLYDSMFGSFRRPGVYQVKGVKDDGNQDNSMKGSYGSTFVEHTLTYESETVKFTDQDIEGFSQGVAIDTIKPHKGNSMAAAEEANIVVALPYEKANELGLKKPNKTSYALQGSDFPSTPREFICSLTGNIFEEPVTLETGQTFEREAIKEWFEKGNRTCPVTGIALKCMAIPFTNLILKRLIDNWRSERFDCLLGLASKRVDNSEDLKLKEGDEGAVFKLESLFSSLKEEEKSTYVKHLMSLGFLPFLFRRFEQGNVEEKSQVVSLLLNCIQVDSGCIYKIARNVNRNCLLELLHSKEVTPTTNAILFLTELLSMKRRKDVTAFMSGLAGEKVFYIMHILLMYLENSSPIEKPLIAVLLLHFDLLVEPQKFSAYREVAVNAIAEALDSSLKDEMAREKCCRALLILCGHFSSTGKIPTKTSTLKQAGYNHDGIEVTISSVRQNIVYSCEDEDKRVEELLKKLLESLIGDGEGPFLKSLSICLDCKHLDLVRACLITVTWLSSSLSTLFGAGLPLPTFSSIISQLKGILENGELELKALASLSLLNFSKISECKTLLKTMAEDVAPLFHGLAEAPCTAKQQHATVSRENL* 1047
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g1395 1046 MobiDBLite consensus disorder prediction 38 85 - -
Vra4g1395 1046 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 575 648 IPR013083 -
Vra4g1395 1046 PANTHER OS04G0584500 PROTEIN 1 1044 - -
Vra4g1395 1046 ProSiteProfiles Zinc finger SWIM-type profile. 281 319 IPR007527 GO:0008270
Vra4g1395 1046 SMART Ubox_2 578 642 IPR003613 GO:0004842|GO:0016567
Vra4g1395 1046 CDD RING-Ubox_PUB 579 620 IPR045210 -
Vra4g1395 1046 SUPERFAMILY ARM repeat 656 1012 IPR016024 -
Vra4g1395 1046 MobiDBLite consensus disorder prediction 57 72 - -
Vra4g1395 1046 Pfam U-box domain 576 645 IPR003613 GO:0004842|GO:0016567
Vra4g1395 1046 PANTHER OS04G0584500 PROTEIN 1 1044 - -
Vra4g1395 1046 SUPERFAMILY RING/U-box 571 645 - -
Vra4g1395 1046 MobiDBLite consensus disorder prediction 145 168 - -
Vra4g1395 1046 MobiDBLite consensus disorder prediction 97 123 - -
Vra4g1395 1046 ProSiteProfiles U-box domain profile. 574 649 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g1395 Vra-Chr4 20672100 20678757 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g1395 558 863 U-box Gene Family AT1G23030 25.680 2.98e-14 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g1395 - - vra:106758533 1983.76