Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g1359 ATGCGGATGAGCTGCAATGGATGTCGAGTTCTGAGAAAAGGTTGCAGTGAGAATTGCAGCATCAGACCTTGTTTACAGTGGATCAAAAGCCCAGAATCTCAGGCCAATGCTACTGTGTTTCTTGCTAAGTTCTACGGCCGTGCTGGGCTCATGAATCTCGTTAACGCCGGCCCAGAACATCTTCGTCCAGCGATCTTTCGTTCGTTGTTGTACGAGGCATGCGGTCGGATAGTGAACCCGATTTACGGTTCAGTTGGTTTGTTGTGGTCGGGGAGCTGGCAGCTGTGTCAGGCCGCCGTGGAGAACGTCTTGAAAGGCGCACCGATTACGCCGATCACGTCTGAAGCGGCTGCTAGCGGGCGGGGTCCACCACTGAAGGCATACGACATACGCCACGTGTCAAGAGATGAGAACTCCGCCGCGTCGAACGAAACTCAGCAGCAACGAGTCAAGACTCGGTCTAGGGTCCGGCGTCCCGTTGCCAACGCCAAGCCCAAATCCACCACAAACGAAAACAACGGTGAGAAGGGAACCGAATTGGGGTCTTCTGAACCGGGTTTGATGACATGCGAATGGACCGAAGAGGCGGTGAATCGATCTGGAAGTCACGAATCATCGCTGAGCCACCAGTCTGAGGCGGCGAATGCGGTGGAGAGCGAGAGCATGGTGTCGGTGGAGACGGCGGAGACTTCGATCCTCTTCCGAGATGAACCGGATTCAAACCCGAAGATCGTGCAACGAACCGATGATGTTGGTTTGGAGCTTACGCTTGGGTTCGAACCGGTTTCACGTGCGCAGCACGTGGTTCCAGTGAAGAAGAGACGGATCGAGTTGAAGGATTTTAGCGGCTCGGCTGAGAGTGGGTCGTGCAAGATGGAGCTGGGGCTTGAATGCTCTGCTTGA 903 0.5493 MRMSCNGCRVLRKGCSENCSIRPCLQWIKSPESQANATVFLAKFYGRAGLMNLVNAGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVENVLKGAPITPITSEAAASGRGPPLKAYDIRHVSRDENSAASNETQQQRVKTRSRVRRPVANAKPKSTTNENNGEKGTELGSSEPGLMTCEWTEEAVNRSGSHESSLSHQSEAANAVESESMVSVETAETSILFRDEPDSNPKIVQRTDDVGLELTLGFEPVSRAQHVVPVKKRRIELKDFSGSAESGSCKMELGLECSA* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g1359 300 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Vra4g1359 300 MobiDBLite consensus disorder prediction 195 223 - -
Vra4g1359 300 Pfam Lateral organ boundaries (LOB) domain 4 102 IPR004883 -
Vra4g1359 300 MobiDBLite consensus disorder prediction 134 223 - -
Vra4g1359 300 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 297 - -
Vra4g1359 300 MobiDBLite consensus disorder prediction 163 179 - -
Vra4g1359 300 PIRSF AS2 1 300 IPR017414 -
Vra4g1359 300 PANTHER LOB DOMAIN-CONTAINING PROTEIN 40 1 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g1359 Vra-Chr4 20310793 20312280 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g1359 1 296 AS2 family AT3G02550 56.711 8.96e-109 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vra4g1359 LOB 2.3e-24 No_clan