Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g1358 ATGGCTATGGTGGTCCTCACACCCCTTTTGCTCATACTCCCTATTCTCCTACTTAAACTCCTCTATGACAACCTCTCGTGTTACTTGTTCACCCCTCTACGCATAAAAAAGATCATGGAGATGCAAGGTGTCCGTGGCCCCAAACCTAGTTTCTTCACAGGCAACATCTTGGACATGGCTTCCCTTGTCTCCAAAACAACCTCCCAAGACATGAAAACCATAAGCCACGACATTGTTGGTCGTCTTCTCCCACATTTCTTGCTTTGGTCTATCCAATTTGGAAAGAGGTTTCTATATTGGAATGGAACAGAACCGAGGCTTTGTCTCACTGAGACCGAATTGATCAAAGAGTTCCTTTCAAAATACAGTACGGTATCTGGGAAATCCTGGCAGCAAAGGCAGGGTTCAAAGAATTTCATTGGGCAAGGACTGTTGATGGCAAATGGTGAAGATTGGTACCACCAACGTCACATCGTTGCCCCTGCATTCATGGGAGACAGACTTAAGAGCTATGCTGCGCACATGGTGGAATGCACTAAGGAGATGCTCCAATCACTCAAAATTGCGTCAGAGTGTGGCCAAACTGAGGTGGAGATTGGTCACTACATGACTAAACTCACTGCAGATATTATCTCTAGGACTGAGTTTGGTACAAGCTATCAGAAAGGGAAGAAAATATTCCACCTCCTCACACTGCTGCAGAGTCGTTGTGCTCAAGCAAGTCGTCATCTTTGCTTTCCCGGAAGCAGGTTTTTTCCAAGCAAGTATAACAGAGAGATAAAGTGTTTGAAGATGGAGGTGGAGACTCTGCTGATGGAGATCATACAAAGCAGAAAAGACTGTGTGGAGATCGGAAGAAGCAACTCTTATGGGAATGATCTGTTGGGTATGCTCCTGAACGAGATGCAGAAGAAAAAAGGGAATGGAAACAGCATCAATCTGCAGCTAGTGATGGATCAATGCAAAACATTTTTCTTTGCCGGACACGAAACCACTGCCCTTTTACTCACTTGGACAGTCATGTTACTCGCCAGCAACACATCATGGCAGGACAAAGTCCGAGAAGAGGTTAGAACTGTCTGCAATGGTGAAATTCCTACTTTGGATCACCTCTCCAAGCTCACTCTTTTGCACATGGTGATTAACGAATCACTGAGGTTGTATCCTCCAGCATCGGTGCTTCCGAGAATGGTGTTTGAAGACATAGTACTAGGTGATCTTTACATCCCAAAGGGTCTGTCGATATGGATCCCTGTGTTGGCCATTCATCACAGTGAAAAGCTATGGGGAAAAGATGCAAACGAGTTCAACCCAGAGAGGTTCAGTTCGAAGTCATTCGTTCCTGGTCGTTTTCTACCGTTTGCTTCTGGTCCCAGAAATTGCGTTGGACAAGCCTTTGCATTAATGGAAGCTAAGATCATATTAGCCATGTTGATTTCTCGGTTCAGCTTCACCATTTCTGAAAATTACCGCCATGCCCCCGTCGTCGTTCTCACCATCAAGCCCAAATATGGGGTTCAGGTTTGTTTGACGCCATTGGAGCCATGA 1548 0.4541 MAMVVLTPLLLILPILLLKLLYDNLSCYLFTPLRIKKIMEMQGVRGPKPSFFTGNILDMASLVSKTTSQDMKTISHDIVGRLLPHFLLWSIQFGKRFLYWNGTEPRLCLTETELIKEFLSKYSTVSGKSWQQRQGSKNFIGQGLLMANGEDWYHQRHIVAPAFMGDRLKSYAAHMVECTKEMLQSLKIASECGQTEVEIGHYMTKLTADIISRTEFGTSYQKGKKIFHLLTLLQSRCAQASRHLCFPGSRFFPSKYNREIKCLKMEVETLLMEIIQSRKDCVEIGRSNSYGNDLLGMLLNEMQKKKGNGNSINLQLVMDQCKTFFFAGHETTALLLTWTVMLLASNTSWQDKVREEVRTVCNGEIPTLDHLSKLTLLHMVINESLRLYPPASVLPRMVFEDIVLGDLYIPKGLSIWIPVLAIHHSEKLWGKDANEFNPERFSSKSFVPGRFLPFASGPRNCVGQAFALMEAKIILAMLISRFSFTISENYRHAPVVVLTIKPKYGVQVCLTPLEP* 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g1358 515 PRINTS P450 superfamily signature 327 344 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra4g1358 515 PRINTS P450 superfamily signature 379 390 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra4g1358 515 PRINTS P450 superfamily signature 452 461 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra4g1358 515 PRINTS P450 superfamily signature 461 472 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra4g1358 515 SUPERFAMILY Cytochrome P450 46 512 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra4g1358 515 Pfam Cytochrome P450 93 488 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra4g1358 515 PANTHER CYTOCHROME P450 FAMILY MEMBER 3 509 - -
Vra4g1358 515 PRINTS E-class P450 group I signature 90 109 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra4g1358 515 PRINTS E-class P450 group I signature 206 224 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra4g1358 515 PRINTS E-class P450 group I signature 316 333 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra4g1358 515 PRINTS E-class P450 group I signature 336 362 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra4g1358 515 PRINTS E-class P450 group I signature 419 443 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra4g1358 515 PRINTS E-class P450 group I signature 451 461 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra4g1358 515 PRINTS E-class P450 group I signature 461 484 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra4g1358 515 Gene3D Cytochrome P450 28 514 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra4g1358 515 PANTHER CYTOCHROME P450 FAMILY PROTEIN 3 509 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g1358 Vra-Chr4 20289294 20292966 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g1358 1 375 Cytochrome P450 AT5G38450 66.138 1.22e-166 475
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g1358 K10717 - gmx:100808392 950.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g1358 4 20289294 20292966 Vra4g1358 4 20289294 20292966 ECH