Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g1348 ATGAATGATTCCGCGGCCAAGAATTTGGCTATCACGGAGAGGAAGGTGCAGCAGAAGCCGGGTGGTTGTGTCGGCATTTTCTTTCAGCTCATTGATTGGAAGAGGAAGCTCTCCAAGAAGAAGCTCTTCTCCAAGAAGCTTCTTCCTCCAGCTCGTGCGAAAAAGTTCAAGGGGGATGAAAAGATGCCAAATTCCAAGATTCACTTGATTGCTAATGAGAACAGTGGAGGTTTCCCAAGTGCTAATAAAAAAGGTGGGAATCATGGCGTAGATGTAGACCAGAAGAGTGAAATGCGAGTTCCGAGTCTGGTAGCCAGGTTGATGGGTCTAGAATCTATTCCGACTGCTCAGCGAGATAAGTCCAAGAAAGCCTTGTGTGGTGATGGGAAGAATGAGTCTTTGAGTGGTGACCATGGTGAGTTGGATCGGCAATGCATGGGTTTGGAAATGGGAGTTGTGAAGCATGATTCAAGACCTCAGAAGCTTCAGAAAACCGGGTCCTATGAGAGAAGGGCAGTGACTAGGTTTGGAGCTGATGCTTTCCAAATTAAGAGTGTATTATCACGAGGAAGAAAGTATCATCACCACCATCATCATCATCCAAAGCTTGCTTCTTCTTTGAAGAGTCCGAGAATTCCTTCCGGAAAGAGTGCTTCTCGAAGCTCTAGGTTAATAGGAGCAGCTACTAAAATTTTGGAACCTGGATTGCAAAGCAGAAGTAGGGCCAAAGGTTCTCTTGCATATCCTGCTTCCATGTACCCTCCCAAGACTGGTATTGTGACCAATGATGTGCAAAATCATTCTTGTTATGAAGCTGGCTCATGCAAGCAATTGATGGAGCAGACCTCTTGCAAAAACTGTGGTAATCTGCTTGACGTAGTTGACTGCAAGCTTGAGGTTGGGGGACAGCCACTGGATCCTCCACCTGTTGTTTCTGATGTGATCACAGCTTCCTCTATGGAATCATCAGAGAAGAAGGGAAAGTCATTAACTTCCCTTGGACATGACAGAGATGTAGTTCTTCTGAGAAGCCAGGAAAAGTTCATATCTCTTGATACTGAAGAGAAGGGGAAAAATAATGCACATAAGTCATGGAATGAGCCCACTGTTAGAAGGATGTCAATGCCCCATGATTGTCTACCTAAATGGAATTCATCTTGCCAACCATCAAGGACCCTGGAGGATGATGCATCTTCTTTTCGCTCAAAACACAAAACTCAAACACAAGAACAGATGTTAACCAGTGAAAGATATTCATCTGGATCTACAATGAGCGATATGCAAGTAAAAGGGGTATCATCATCTACGAGTGCTATGAATGGTGCTAAGGACTTTGTTTCTATGAATAGAAGTCTTACTGGTCGAACAAGGACAAGATCTCCTACCAAAGCCGACAGTTGTAGATTTGACCTAGAGAGAAAACCTTATAGTCGACAGCATAATTCTTTGTCTCACGTAAGAACATTAGAGAGAAAAAGAAGGATCCCAAATGCCACTCAACTAGAAGGCACAGGTTCTGTTTATTCAGTTGGTGCAAAACAGAGAAATCTCCATTCTAATGGATTGGGTGGCAAAAGAAGGGACTCCAATGCTTCCTCCTTGAACAATTCCATTATAAGAAATAAGCAAGTTGCTCAAGGAGAAAGAATTATTAAGGTTAAGGACAACAAGATCAATGATGTAGTGTCATTTACATTTAATTCTCCCTTGAAGCAAAAGATAGGAGTAACTGTTGACAGGGAAGAGACAAGCACTGACAATGAGAGTATTAAAAGGCCTAAACCATTGAGAGTTGATGCTTTAGGTGCCTTTCTAGAACAAAAATTGAAGGAATTAACCTCTCAAAGAGACGAAGAATTGGCTACAGGTGTTCCGCCTAAAAAATCAAGTGCCATGATTCTTCAAGAGCTGATATCTGCTTTAAGTTCAGAGCATTTGATCTGTCATGATGGTCATCATGTGTTTAATGAAAATGTTGGCTTGCATTATGGGGAAAAACAAGAAAGGTTATTAGGAACCTCTTGCAATGGTAATCATCTCAGTCCCGGATCTGTTTTGGAAGCTTCCTTTTCTTCCAGTAGTCTGGATGAAAGCTCAGGGCATTGTTTTCACCCTGATTCCATGAATCACTCTTGTTATGGTCAACTAGAACATGAAGCTGAACTTTCAGATTCTGCAACATCCTTTACCAAAGGGAAGATAGGTGAGATACTGAGTGATCTTGTCAGCCAACTTCCCAGGGCATTGGAAAGTTTGCACACTTATGGGACAGAATTAACAATAAGCAAGCTTAACCATATGAAGGATATTCTCTTGCATGCTGAGTTGGTGCTTGGAATTACAACTGATCGCAGACAGGATGATGGGCCACAACTTATAATTCATCGGTTTCTCGTTGATGATCTTGAGAGCATGACGAGTGATACCATGTGGACAGATGTGAGTTGTGAGGATTCTAAACAGAGAAAGGAAATAAAGGGCTTTCTCCTTGACTGTGTTGTGGAATATCTAGAATCAAACTGCAGCCTTTATTTTAACTCTGGATTCAGGGCATGGACAAAGTTACCTTTATGCATGAGAGCTGAGATGTTGGCCAAAGAGGTGAAGAGGGAGATCAACAAATGGTTATGTATGGTTGGAATGGTACCTGATGAAATAATAGAATGGGAAATGAGCCACTCCTTGGGGAAATGGACTGACTTTGGTATTGAAGCATGTGAGGCTGGTGTTGATATAGATGGGGATATACTTCAAATTTTGGTTGATGAAGTTGTTGAAGACCTTGTAGGTTCCACTCATGGCTCCATCACCTTCTAA 2817 0.4214 MNDSAAKNLAITERKVQQKPGGCVGIFFQLIDWKRKLSKKKLFSKKLLPPARAKKFKGDEKMPNSKIHLIANENSGGFPSANKKGGNHGVDVDQKSEMRVPSLVARLMGLESIPTAQRDKSKKALCGDGKNESLSGDHGELDRQCMGLEMGVVKHDSRPQKLQKTGSYERRAVTRFGADAFQIKSVLSRGRKYHHHHHHHPKLASSLKSPRIPSGKSASRSSRLIGAATKILEPGLQSRSRAKGSLAYPASMYPPKTGIVTNDVQNHSCYEAGSCKQLMEQTSCKNCGNLLDVVDCKLEVGGQPLDPPPVVSDVITASSMESSEKKGKSLTSLGHDRDVVLLRSQEKFISLDTEEKGKNNAHKSWNEPTVRRMSMPHDCLPKWNSSCQPSRTLEDDASSFRSKHKTQTQEQMLTSERYSSGSTMSDMQVKGVSSSTSAMNGAKDFVSMNRSLTGRTRTRSPTKADSCRFDLERKPYSRQHNSLSHVRTLERKRRIPNATQLEGTGSVYSVGAKQRNLHSNGLGGKRRDSNASSLNNSIIRNKQVAQGERIIKVKDNKINDVVSFTFNSPLKQKIGVTVDREETSTDNESIKRPKPLRVDALGAFLEQKLKELTSQRDEELATGVPPKKSSAMILQELISALSSEHLICHDGHHVFNENVGLHYGEKQERLLGTSCNGNHLSPGSVLEASFSSSSLDESSGHCFHPDSMNHSCYGQLEHEAELSDSATSFTKGKIGEILSDLVSQLPRALESLHTYGTELTISKLNHMKDILLHAELVLGITTDRRQDDGPQLIIHRFLVDDLESMTSDTMWTDVSCEDSKQRKEIKGFLLDCVVEYLESNCSLYFNSGFRAWTKLPLCMRAEMLAKEVKREINKWLCMVGMVPDEIIEWEMSHSLGKWTDFGIEACEAGVDIDGDILQILVDEVVEDLVGSTHGSITF* 939
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g1348 938 MobiDBLite consensus disorder prediction 515 535 - -
Vra4g1348 938 MobiDBLite consensus disorder prediction 121 140 - -
Vra4g1348 938 MobiDBLite consensus disorder prediction 189 205 - -
Vra4g1348 938 MobiDBLite consensus disorder prediction 390 428 - -
Vra4g1348 938 MobiDBLite consensus disorder prediction 210 224 - -
Vra4g1348 938 PANTHER PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT P DOWN SYNDROME CRITICAL REGION PROTEIN 5 -RELATED 9 930 - -
Vra4g1348 938 Pfam Domain of unknown function (DUF4378) 765 923 IPR025486 -
Vra4g1348 938 PANTHER DNAA INITIATOR-ASSOCIATING PROTEIN 9 930 - -
Vra4g1348 938 Pfam DUF761-associated sequence motif 93 119 IPR032795 -
Vra4g1348 938 MobiDBLite consensus disorder prediction 404 428 - -
Vra4g1348 938 MobiDBLite consensus disorder prediction 189 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g1348 Vra-Chr4 20177295 20182156 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g1348 1 928 TRM (TON1 Recruiting Motif) Superfamily AT1G67040 31.263 4.71e-82 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g1348 - - gmx:100813026 1472.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g1348 4 20177295 20182156 Vra4g1348 4 20177295 20182156 ECH