Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g1345 ATGGCTGAAGTTGAATATCATGCAAAATCCACTGCTAATACCCCACCCCTAAAGCTCTTTGGCATCAACATTAACAAGTCCCCAGAAGATCAAACCGATCACGAAGCAGGTTCCGATTCTGAGCCTTTCATTGCAAGAAAATACGAGTGTCAGTACTGTTTCAGAGAATTCGCAAACTCACAGGCACTTGGAGGGCACCAAAACGCGCACAAGAAAGAGAGACAGATCTTGAAACGTGCTCAAATGCAGGCTGCTCGCGGCTTTGTGGCTTCACACGTTCACAACACCATCATATCAACCTTCTCACCACAATCTCAGTGGCTATGCACACCACATGCATGGTCAGGTGGTGGTGCGTATGACTCAGGAGTGGCTTTTGTGACTCCCGGAAGACGAGTCTATGCCACGGCCGGTGCATCCATCACTGCTGGCCTTGGCCACCGCAATCCTCCGGCGGAGATGGGTAGCTTCAACAGCCACAGCTTCAACGGCAGAGGTAACGGTGGTGGTGGTGGTGGTTTGGATTTGCATCTTAGCCTATGA 543 0.5064 MAEVEYHAKSTANTPPLKLFGININKSPEDQTDHEAGSDSEPFIARKYECQYCFREFANSQALGGHQNAHKKERQILKRAQMQAARGFVASHVHNTIISTFSPQSQWLCTPHAWSGGGAYDSGVAFVTPGRRVYATAGASITAGLGHRNPPAEMGSFNSHSFNGRGNGGGGGGLDLHLSL* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g1345 180 ProSiteProfiles Zinc finger C2H2 type domain profile. 48 75 IPR013087 -
Vra4g1345 180 PANTHER ZINC FINGER PROTEIN 5 5 109 IPR044299 GO:0010090
Vra4g1345 180 PANTHER ZINC FINGER PROTEIN 6-LIKE 5 109 - -
Vra4g1345 180 Gene3D Classic Zinc Finger 31 98 - -
Vra4g1345 180 ProSitePatterns Zinc finger C2H2 type domain signature. 50 70 IPR013087 -
Vra4g1345 180 SUPERFAMILY beta-beta-alpha zinc fingers 46 75 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g1345 Vra-Chr4 20168257 20169329 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g1345 14 112 C2H2 Transcription Factor Family AT1G67030 55.455 4.39e-29 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vra4g1345 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g1345 - - gmx:100527555 239.195