Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g1339 ATGGAACTCATCTGCGAAAACGAGATCAGCTACATAACCATTAACGATGTCAAGTACCAGGTTTGGAATGCCAACCCAGATAGCCATACTTTGAAAATCACCAGACAAGATTACTCGATAGACTTATGCCAGCCAGAACAAGTCAGCACCAGCCTTGACACTCAGCTCTACGTTTACGAGTCACACTATAAGAATCTTACCCTTTCCTATGGTTGCACTCCTTCAGACTTTTTGCCTCTCACNTATATTCCTTGTAACGGAACTACTTCTGGGGAAACCGTTTATTCTCAGTTTGGATCATTTTCTCCCGTGTCTTGCAAAACAAGTGTGGTTGTTCCGGTTCCTCTTTCATTTCAGGAGATTAATAATTTCTTCCAAGTATACCGGNCAATCAAAGAAGGGTTTGTGGTGAGATGGATAATAGGTGTTGAAGAATGTGACAAGTGCGAAAACTCAGGTGGAGAATGCGGTTTTGAAGGTTCTTCACAGCAAACTTGTTACTGCAGAGATGGACCTTGTCCTAATTTCTCACAAGATAGCGAAGCATCTTCAGGTAAACGCAAGAACGTAGATGTAGCAATAGGCGCTACTGTAGGAGGAGTTGCAGCCCTTGTTGTCATTCTTGGATGTGTGTGCTTTATTGCAAGGAGTGTGGAGATATTCATAGTTCCAACTTCAAGTGGAGACACTTTTGCATCAACTACTATCACGTCTCAAATTCTATCTTCTTACCAATCTTCCAAGCCTGATCCAGTAGCCAGGACTTTCTTTGGTATCCAGGTCTTTACCTGTGAGGAACTGGAGGAAGCTACCAAAAACTTTGATGCTTCTAGAGAACTTGGTAAGGGAGGTTTTGGCACTGTTTACAAAGGTGAACTCAAAGATGGACGTACGGTTGCAGTGAAACGCCATGATGAAAGCAACTCTAAGCGTATTATGCAGTTCATGAATGAGGTTCAGATTCTAGGCCGCTTAAGGCACAAGAACCTTGTGACACTCTTTGGATGCACCTCTAAACATAGCAGAGAACTTCTCCTTGTCTACGAATTCATACCTAATGGAACAGTGGCTTATCATCTTCAAGGAAGAGGCTCAAAATCAACTTTACTCCCTTGGCCTATAAGATTGAACATTGCTGTTGAAACGGCTGAGGCTCTACTCTACCTACATGCAAACGATGTCATACACCGCGATGTTAAAACCAGCAACATTCTCTTGGATGATCAATTTTGCGTCAAGGTTGCTGATTTTGGTCTCTTAAGGGCTTTCCCCACTGATGTCACTCATGTGTCAACAGCTCCACAAGGAACACCAGGTTATGTTGACCCTGAGTATCACAAGTGCTACCATCTCACTGATAAAAGTGATGTTTACAGCTTTGGAGTGGTTTTGGTTGAGCTTATATCATCATTGCGAGCTGTGGACTTCAATAGGAATGGCAGTGATGTGAACTTGTCATACATGGCTTTAAGAAAAATTCAAAACCAGGAACTGCATGAATTGGTTGATCCTTATCTTGGGTTTGAGAAGAATCCTACTATGAGGATAATTATAACAGCAGTGGCAGCATTGGCCTTTAGGTGTTTGCAACAGGAAAGAGTTTTGAGACCATGCATGGATGAGGTGGTGGAGATCTTACGAGGAATCAAGAGTGATGAGCTTGGTGCGAGGGAAGAGACAGAAATATTGACTCATGAAGTTATACTTTCGAAGACGGCTTATTTTCCTGATTCAATAGATTCACTTGTTGACGATTGTTAG 1761 0.4231 MELICENEISYITINDVKYQVWNANPDSHTLKITRQDYSIDLCQPEQVSTSLDTQLYVYESHYKNLTLSYGCTPSDFLPLTYIPCNGTTSGETVYSQFGSFSPVSCKTSVVVPVPLSFQEINNFFQVYRXIKEGFVVRWIIGVEECDKCENSGGECGFEGSSQQTCYCRDGPCPNFSQDSEASSGKRKNVDVAIGATVGGVAALVVILGCVCFIARSVEIFIVPTSSGDTFASTTITSQILSSYQSSKPDPVARTFFGIQVFTCEELEEATKNFDASRELGKGGFGTVYKGELKDGRTVAVKRHDESNSKRIMQFMNEVQILGRLRHKNLVTLFGCTSKHSRELLLVYEFIPNGTVAYHLQGRGSKSTLLPWPIRLNIAVETAEALLYLHANDVIHRDVKTSNILLDDQFCVKVADFGLLRAFPTDVTHVSTAPQGTPGYVDPEYHKCYHLTDKSDVYSFGVVLVELISSLRAVDFNRNGSDVNLSYMALRKIQNQELHELVDPYLGFEKNPTMRIIITAVAALAFRCLQQERVLRPCMDEVVEILRGIKSDELGAREETEILTHEVILSKTAYFPDSIDSLVDDC* 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g1339 586 ProSitePatterns Protein kinases ATP-binding region signature. 280 302 IPR017441 GO:0005524
Vra4g1339 586 SUPERFAMILY Protein kinase-like (PK-like) 248 550 IPR011009 -
Vra4g1339 586 Pfam Protein tyrosine and serine/threonine kinase 277 546 IPR001245 GO:0004672|GO:0006468
Vra4g1339 586 Gene3D Phosphorylase Kinase; domain 1 247 350 - -
Vra4g1339 586 PANTHER WALL ASSOCIATED KINASE-LIKE PROTEIN 3 586 - -
Vra4g1339 586 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 3 586 IPR044652 -
Vra4g1339 586 Pfam Wall-associated receptor kinase C-terminal 102 171 IPR032872 -
Vra4g1339 586 ProSiteProfiles Protein kinase domain profile. 274 568 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g1339 586 ProSitePatterns Serine/Threonine protein kinases active-site signature. 394 406 IPR008271 GO:0004672|GO:0006468
Vra4g1339 586 SMART serkin_6 274 545 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g1339 586 Gene3D Transferase(Phosphotransferase) domain 1 351 561 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g1339 Vra-Chr4 20114685 20120760 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g1339 29 584 Receptor kinase-like Gene Family AT1G25390 43.836 5.33e-139 416
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vra4g1339 PK_Tyr_Ser-Thr 1.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g1339 - - vra:106758526 1157.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g1339 4 20114685 20120760 Vra4g1339 4 20114685 20120760 ECH