Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g1338 ATGAAACCTAAGCTAACTCTTCACCCTTCTTTCATCTTCGTTCTGTTGCTCATCTCAACCAATGCTCCGACCTATCTTTGTGAGGAGGATGCTCGATACACCAACTGTAGGAACGCTTTTACATGCGGAGATACCAAGCTGGATCTCAGGTACCCCTTCTCGGGAGAAAACAGAGATAGTTATTGCGGCGAAGAGAAGCTCACGTGTGAAAAACAAGTCCCCATGATAACCATCAACGATGCCAAGTACCGTATTCTTGATTGGCGTAATACAACACAGACAATAACAGTGGCCAGGGATGATTATTGGGATGGTATCTGTGTGAGTGAGTACAAGAACAGTACCTTTGGTAACGCTCACTTTCAATATGATCAGCAATATAATGATCTTGGTAACGTCACACTCTTTTATTGCCCTTCCGATTCAGCTCCCTCTATACTCACGGAATTTTATCAAGAAAGTTGTGGTGCTGGTAAATTTGTCTTCTACACTCCCCTACCCGTACCTCCGTACTCGGGGAACTGTGCGGTTGTGGCGATTCCGATATTTGAAACCAACGCTTCACTTGTTCGTGAAAACAAAATAACCGAGGCGTTACGGAATGGTTTTGAGTTGAATTGGGAGGGAGATAACGGGGAGTGTGAGAAATGCAGTGATTCTGGTGGAGAGTGTGGAGTTGATGAAGGAGATGGAGGATTTCAATGTTTCTGCGTGGATGGACCCCATTCTGCTACATGCAAAGGTAAACGCAACAATGTAGGTGTAGCAATAGGCGCTACTGTAGGAGGAGTTGCAGCCCTTGTTGTCATTCTTGGATGTGTGTACTTTATGATACAAAGAAGAAGAAAAATTTATCAAAAATCAAGAAGTATGGAGCTCTTCATAGCTCCAACTTCAAGCGGAGACACTTTTGCATCAACAACTATCACGTCTCAAAGTCTATCTTCTTACCAATCTTCCAATCCAGTAACCAGGAGTTACTACTTTGGTGTCCAGGTCTTTACCTATGAGGAATTGGAGGAAGCTACCAAAAACTTTGATGCTTCTAGAGAACTTGGTGAGGGAGGTTTTGGCACTGTTTACAAAGGTGAACTCAAAGATGGACGTACAGTTGCAGTGAAACGCCATTACGAAAGCAACTCTAGGCGTATTGTGCAGTTCATGAATGAAGTTCAGATTCTAGCCCGCTTAAGGCACAAGAACCTTGTGACACTCTTTGGTTGCACGTCTAAACATAGCAGAGAACTTCTCCTTGTCTATGAATTCATACCTAATGGAACAGTGGCATATCATCTTCAAGGAAGAGGCTCAAAATCAACTTTACTCCCTTGGCCTATAAGATTGAACATTGCTGTTGAAACGGCTGAGGCTCTAGCCTACCTACATGCAAATGATGTCATACACCGTGATGTTAAAACCAACAACATTCTCTTGGATGATCAATTTTGCGTCAAGGTTGCTGATTTTGGTCTCTCGAGGGATTTCCCAACTGATGTCACTCATGTGTCAACAGCTCCACAGGGAACACCTGGTTATGTTGACCCTGAATATTACCAGTGCTACCAGCTCACTGATAAAAGTGATGTTTACAGCTTTGGAGTGGTTTTGGTTGAGCTTATATCATCACTGCAAGCTGTGGACATCAACAGGAATCGCAGTGATGTGAACTTGTCAAACATGGCTATAAAAAAAATTCAAAACCAGGAACTGCATGAATTGGTTGATCCTTATCTTGGGTTTGAGAAGGATCCTGCTATGAGGAGGATGACAACAGCAGTGGCAGAATTGGCCTTTAGGTGTTTGCAACAGGAAAGAGATTTGAGACCATGCATGGATGAGGTGGTGGAGATCTTAAGAGGAATCAAGAGTGATGGGCTTGGTGGACGGGAAGAGACAGAAATATTGGATATAAGGACTGATGAAGCTATACTTTTGAAGAAGGCTCATTCTCCTGTTTCACCAAATTCAGTTGTTGACAATTGGGTTAGCGGCTCCTCTGTATCTAATTCCTCATAG 2016 0.432 MKPKLTLHPSFIFVLLLISTNAPTYLCEEDARYTNCRNAFTCGDTKLDLRYPFSGENRDSYCGEEKLTCEKQVPMITINDAKYRILDWRNTTQTITVARDDYWDGICVSEYKNSTFGNAHFQYDQQYNDLGNVTLFYCPSDSAPSILTEFYQESCGAGKFVFYTPLPVPPYSGNCAVVAIPIFETNASLVRENKITEALRNGFELNWEGDNGECEKCSDSGGECGVDEGDGGFQCFCVDGPHSATCKGKRNNVGVAIGATVGGVAALVVILGCVYFMIQRRRKIYQKSRSMELFIAPTSSGDTFASTTITSQSLSSYQSSNPVTRSYYFGVQVFTYEELEEATKNFDASRELGEGGFGTVYKGELKDGRTVAVKRHYESNSRRIVQFMNEVQILARLRHKNLVTLFGCTSKHSRELLLVYEFIPNGTVAYHLQGRGSKSTLLPWPIRLNIAVETAEALAYLHANDVIHRDVKTNNILLDDQFCVKVADFGLSRDFPTDVTHVSTAPQGTPGYVDPEYYQCYQLTDKSDVYSFGVVLVELISSLQAVDINRNRSDVNLSNMAIKKIQNQELHELVDPYLGFEKDPAMRRMTTAVAELAFRCLQQERDLRPCMDEVVEILRGIKSDGLGGREETEILDIRTDEAILLKKAHSPVSPNSVVDNWVSGSSVSNSS* 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g1338 671 PANTHER WALL ASSOCIATED KINASE-LIKE PROTEIN 13 671 - -
Vra4g1338 671 ProSitePatterns Serine/Threonine protein kinases active-site signature. 466 478 IPR008271 GO:0004672|GO:0006468
Vra4g1338 671 Pfam Wall-associated receptor kinase C-terminal 174 240 IPR032872 -
Vra4g1338 671 Pfam Protein tyrosine and serine/threonine kinase 349 618 IPR001245 GO:0004672|GO:0006468
Vra4g1338 671 Gene3D Phosphorylase Kinase; domain 1 318 422 - -
Vra4g1338 671 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 13 671 IPR044652 -
Vra4g1338 671 Gene3D Transferase(Phosphotransferase) domain 1 423 625 - -
Vra4g1338 671 ProSitePatterns Protein kinases ATP-binding region signature. 352 374 IPR017441 GO:0005524
Vra4g1338 671 SUPERFAMILY Protein kinase-like (PK-like) 320 621 IPR011009 -
Vra4g1338 671 SMART serkin_6 346 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g1338 671 ProSiteProfiles Protein kinase domain profile. 346 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g1338 Vra-Chr4 20105565 20113621 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g1338 32 671 Receptor kinase-like Gene Family AT1G25390 43.932 3.64e-156 463
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vra4g1338 PK_Tyr_Ser-Thr 8.7e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g1338 - - gmx:100811407 767.689