Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g1337 ATGGAACTCATCTGCGAAAACGAGATCGGCTACATAACCATTAACGATGTCAANTACCAGGTTTTGGAAGCCAACCCAGATGACCATACTTTGAAAATCACCAAACAAGATCAGTTGATAGACTTATGCCAGCCAGAACAAGTCAGCACCAGCCTTGACACTCAGCTTTACGTTTACGAGTCACACTATAAGAATCTTACCCTTTCCTATGGTTGCACTCCTTCAGACTTTTTGCCTCTCACTTATATTCCTTGTAACGGAACTACTTCTGGGGAAANCGTTTATTCTCAGTTTGNGTCATTTTCTCCCGTGTCTTGCAAAACAAGTGTGGTTGTTCCGGTTCCTCTTTCATTTCAGGAGATTAATAATTTCTTCCAAGTATACCGGACAATCAAAGAAGGGTTTGTGGTGAGATGGATAATAGGTGTTGAAAAATGTGACAAGTGCGAAAAATCAGGTGGAGAATGCGGTTTTGAAGGGTCTTCACAGCAAACATGTTACTGCAGAGATGGACCTTGTCCTAATAATATCTCGCCAGATAGCGAAGCATCTTCAGGAAAAAGAAAAATATCATTGCTAATGTGGATCTTGATTATTGTACCTACAACTTTTTTTATAACATTCATCTTTTTGCGCTACTATCTGATCAAGAGAAAACCAAAAAAGAGCAATAAGAGTCTCTTAAGAGAAAATTTTGGTAATGAAGGCCTCACTTTAGAGCCCCTACAATTCAACTTGGCTACACTTAAAGCAGCAACCAACAATTTTTCAGATGAGAATAGGATTGGCAAAGGAGGATTTGGAGAAGTTTATAAGGGAATTCTTCTTGATGGACAACACGTAGCAGTAAAAAGGCTTTCAAAAAATTCTATGCAAGGTGCAAAGGAGTTTAAAAATGAAGTTTCAGTTATAGCTAAACTTCAACATAGAAATCTTGTGACATTTGTTGGTTTCTGTCTTGAAGAACAAACTAAAATTCTTATATATGAATATGTACCAAACAAGAGTCTTGACTACTTTTTATTTGATTCTCAACGATCAAGATTGTTAAGTTGGATTAAACGTTATGATATTATCAAAGGGATTGCTCGAGGAATATTTTATTTACATGAACTTTCTCGACTCAAAGTTATACATCGTGATCTCAAACCAAGTAATGTTTTGTTAGATGAAAATATGATTCCAAAAATTTCAGATTTTGGTCTAGCTAGAATTGTTGAAATAAATCAAGATCGAATCAGTACAAATAAAATTGTTGGAACATTTGGATATATGTCTCCGGAATACATAATGCTTGGACAATTTTCAGAAAAGTCAGATGTTTTTAGTTTTGGAGTCATGATTCTAGAGATTGTTACTGGAAAAAAGAATTTGAGTTCTCACAATTCACGTTATGTCACTGAAGGTCTCTTAAGTTATGTATGGAGACAATGGAGGGACCAAACATGGTTAGAAATATTAGATCCAAATATTGAGGAAAATTATTCAGAAATTGAAGTTACAAAATGTATTCAAATCGGTTTATTATGCGTTCAACAGAATCCTGACGTCAGACCAACAATGACAAATGTTCTATCATACTTTAGTAGTCATTTTAATGAACTTCCAAGTTCACAAGAACCAGCATTTTTCTTGAATGAAAGGACGAATCCAACCATATTTGCTCATGAATCAAGTATTAATCAACCTATCAACATCTCGATTCCATTCTCTACTAATAAAATGTCTGTAAGTGAATTTTTACCTCGGTAG 1752 0.3499 MELICENEIGYITINDVXYQVLEANPDDHTLKITKQDQLIDLCQPEQVSTSLDTQLYVYESHYKNLTLSYGCTPSDFLPLTYIPCNGTTSGEXVYSQFXSFSPVSCKTSVVVPVPLSFQEINNFFQVYRTIKEGFVVRWIIGVEKCDKCEKSGGECGFEGSSQQTCYCRDGPCPNNISPDSEASSGKRKISLLMWILIIVPTTFFITFIFLRYYLIKRKPKKSNKSLLRENFGNEGLTLEPLQFNLATLKAATNNFSDENRIGKGGFGEVYKGILLDGQHVAVKRLSKNSMQGAKEFKNEVSVIAKLQHRNLVTFVGFCLEEQTKILIYEYVPNKSLDYFLFDSQRSRLLSWIKRYDIIKGIARGIFYLHELSRLKVIHRDLKPSNVLLDENMIPKISDFGLARIVEINQDRISTNKIVGTFGYMSPEYIMLGQFSEKSDVFSFGVMILEIVTGKKNLSSHNSRYVTEGLLSYVWRQWRDQTWLEILDPNIEENYSEIEVTKCIQIGLLCVQQNPDVRPTMTNVLSYFSSHFNELPSSQEPAFFLNERTNPTIFAHESSINQPINISIPFSTNKMSVSEFLPR* 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g1337 583 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 161 574 - -
Vra4g1337 583 CDD STKc_IRAK 262 528 - -
Vra4g1337 583 SUPERFAMILY Protein kinase-like (PK-like) 239 562 IPR011009 -
Vra4g1337 583 Gene3D Phosphorylase Kinase; domain 1 218 331 - -
Vra4g1337 583 ProSitePatterns Serine/Threonine protein kinases active-site signature. 377 389 IPR008271 GO:0004672|GO:0006468
Vra4g1337 583 SMART serkin_6 256 528 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g1337 583 Pfam Wall-associated receptor kinase C-terminal 102 171 IPR032872 -
Vra4g1337 583 ProSitePatterns Protein kinases ATP-binding region signature. 262 284 IPR017441 GO:0005524
Vra4g1337 583 ProSiteProfiles Protein kinase domain profile. 256 532 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g1337 583 Gene3D Transferase(Phosphotransferase) domain 1 332 541 - -
Vra4g1337 583 Pfam Protein kinase domain 257 526 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g1337 583 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 161 574 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g1337 Vra-Chr4 20093787 20099052 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g1337 180 583 Receptor kinase-like Gene Family AT4G23220 47.901 3.39e-125 381
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vra4g1337 Pkinase 1.3e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g1337 - - vra:106758523 1161.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g1337 4 20093787 20099052 Vra4g1337 4 20093787 20099052 ECH