Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g1336 ATGGATGAAAGAAAAAGAAAAGTATCATTGCGAATATGGATCTTGATTATTGTACCTACAACTGTTTTTATAACATTCATCTTTTTGTGCTACTATCTGATCAAGAGAAAACCAAAAAAGAGCAATAAGAGTCTCCTAAGAGAAAATTTTGGTAAAGAAAGTCTCACTTTAGAGCCCCTACAATTCAACTTGGCCACACTTAAAGCAGCAACCAACAATTTTTCAGAGCAAAATAGGATTGGCAAAGGAGGATTTGGAGAAGTTTATAAGGGAATTCTTCTTGATGGACAACACGTAGCAGTAAAAATGCTCTCAAAAAATTCGACGCAAGGTGCAAAGGAGTTTAAAAATGAAGTTTCAGTTATAGCTAAACTACAACATAGAAATCTTGTGACATTTATTGGTTTCTGTCTTGAGGAGCAAACTAAAATTCTTATATATGAATATGTATCAAACAAGAGTCTTGACTACTTTTTATTTGATTCTCAACTATCAAAATTGTTAAGTTGGACTGAACGGTATAATATTATCAAAGGGATTGCTCGAGGAATATTTTATTTACATGAACTTTCTCGGCTCAAAGTTATACATCGTGATCTCAAACCAAGTAATGTTTTGTTAGATGAAAATATGATTCCAAAAATTTCAGATTTTGGTCTAGCTAAGATTGTTGAAATAAATCAAGATCAAGTCAATACAAATAAAATTGTTGGGACATTTGGATATATGCCTCCAGAATATGCAATGTTTGGACAATTTTCAGAAAAGTTAGATGTTTTTAGTTTTGGAGTCATGGTTCTAGAAATTATTACTGGCAAAAAGAATTTGAGTTCTCACAAACCACATGTTCCTGAAGGTCTCTTAAGTTATGTATGGAGACAATGGAGGGACCAAACGTGGTTAGACATATTAGATCCAAATATCAAAGAAAATTATTCAGAATTTGAGGTTACTAAGTGCATTCAAATTGGTTTATTATGCGTTCAACAAAATCCTGATGTCAGACCTACAATGACAGATGTTCTATCATACTTTAGTAGTTATTTCAATGAACTACCAAGTTCACAAGAACCAGCATTTTTCTTAAATGAAAGGTCGAATCCAACAATATTTCCTCAGGAATCAAATATTAATCAACCTATCAACAACTGTATTCCATTCTCTACTAATAAAATGTCTGTAAGTGAATTTTTACCTCGATAG 1203 0.3209 MDERKRKVSLRIWILIIVPTTVFITFIFLCYYLIKRKPKKSNKSLLRENFGKESLTLEPLQFNLATLKAATNNFSEQNRIGKGGFGEVYKGILLDGQHVAVKMLSKNSTQGAKEFKNEVSVIAKLQHRNLVTFIGFCLEEQTKILIYEYVSNKSLDYFLFDSQLSKLLSWTERYNIIKGIARGIFYLHELSRLKVIHRDLKPSNVLLDENMIPKISDFGLAKIVEINQDQVNTNKIVGTFGYMPPEYAMFGQFSEKLDVFSFGVMVLEIITGKKNLSSHKPHVPEGLLSYVWRQWRDQTWLDILDPNIKENYSEFEVTKCIQIGLLCVQQNPDVRPTMTDVLSYFSSYFNELPSSQEPAFFLNERSNPTIFPQESNINQPINNCIPFSTNKMSVSEFLPR* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g1336 400 Gene3D Phosphorylase Kinase; domain 1 35 149 - -
Vra4g1336 400 ProSiteProfiles Protein kinase domain profile. 74 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g1336 400 SMART serkin_6 74 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g1336 400 Gene3D Transferase(Phosphotransferase) domain 1 150 359 - -
Vra4g1336 400 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 5 391 - -
Vra4g1336 400 Pfam Protein kinase domain 75 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra4g1336 400 ProSitePatterns Protein kinases ATP-binding region signature. 80 102 IPR017441 GO:0005524
Vra4g1336 400 SUPERFAMILY Protein kinase-like (PK-like) 57 376 IPR011009 -
Vra4g1336 400 CDD STKc_IRAK 80 345 - -
Vra4g1336 400 ProSitePatterns Serine/Threonine protein kinases active-site signature. 195 207 IPR008271 GO:0004672|GO:0006468
Vra4g1336 400 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 5 391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g1336 Vra-Chr4 20089616 20091465 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g1336 12 400 Receptor kinase-like Gene Family AT4G05200 47.716 2.94e-126 378
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vra4g1336 Pkinase 3.2e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g1336 - - var:108321623 740.725