Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g1326 ATGGATTTCCATAGTAATTCGGTTTCATCAAATGTTGTCTCAAATTCTATGTTAGTGCCCTCTTGTCCTATACTTCATTATCATCAAGAAAAAGATAGAGAGAGAAACACTTTCAATCTACCATTGGATTTCAACAGTAATTCAGCTTCAACAAATGTGTTGTCGAATTCCATTTCAATGCCCTCGTATCCAGTGCCTCAGTATCGTCCACAAAACATACAGGAGGGGAAACTCAGATCCTTCTGGGAGAAGCAGTTGATGGATATTCAAGCTGCTGAAGCATTTAAGAGCCAGCACAAGTTGCCGCTAGCTCGAATCAGAAGGATAATGAAAACAGACGCAGATGTGCAGATGGTGAGTGCTGAAACTCCCATGCTGATGTCAAAAGCATGTGAGATTTTCATCCAGGAACTCACTTATCGTGCCTGGATGCGTGCTGAAGAGAGCAACAAAAGTACTGTGCAGCCATGTGACGTTGCCAAGGTTATTATGCAGAATCATGCCATGCAATTCCTCACTGATATTGTCCCAGATAACCTCCAAAATTTCTGTGCTTATGGTGCTCAGCAGGAAGAGCTTGCTGCTGGAAACATTGCAGAAGGAAGGCATTCAAGCCAAGCTAACCTGCCTGATACAGCTGGTTTCATGGGAAATCCTATGAATGTGATGAATATGGGCAGAGGCTTGGAGGCAGGAAACCAGCTGATTCCTCAACCCAACAACATGATGCAGCCTCCCTTTGTTATGCCTTCAGATCAATTTCCTTACAATTTTCATCCCAAGTGA 786 0.4326 MDFHSNSVSSNVVSNSMLVPSCPILHYHQEKDRERNTFNLPLDFNSNSASTNVLSNSISMPSYPVPQYRPQNIQEGKLRSFWEKQLMDIQAAEAFKSQHKLPLARIRRIMKTDADVQMVSAETPMLMSKACEIFIQELTYRAWMRAEESNKSTVQPCDVAKVIMQNHAMQFLTDIVPDNLQNFCAYGAQQEELAAGNIAEGRHSSQANLPDTAGFMGNPMNVMNMGRGLEAGNQLIPQPNNMMQPPFVMPSDQFPYNFHPK* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g1326 261 Gene3D Histone, subunit A 65 178 IPR009072 GO:0046982
Vra4g1326 261 SUPERFAMILY Histone-fold 76 171 IPR009072 GO:0046982
Vra4g1326 261 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 66 203 - -
Vra4g1326 261 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 100 162 IPR003958 -
Vra4g1326 261 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA 66 203 IPR027170 GO:0003700|GO:0006355|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g1326 Vra-Chr4 20045049 20047800 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g1326 42 224 CCAAT-HAP5 Transcription Factor Family AT1G54830 36.364 4.28e-32 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Vra4g1326 CBFD_NFYB_HMF 3.3e-15 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g1326 - K08066 gsj:114370134 174.866