Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g1317 ATGGCTTTACAGAACATTGGTGCTGCAAACAGCGATGATGCCTTCTATAGGTACAAGATGCCTAAGATGATTACCAAAATTGAGGGCAGAGGTAATGGCATCAAAACTAATGTCGTCAATATGGTTGATATTGCAAAGGCATTGGCAAGGCCGGCTTCTTACACGACTAAGTATTTTGGTTGTGAGCTTGGGGCCCAGTCTAAGTTTGATGAGAAGACTGGGACTTCCCACGTCAATGGAGCTCATGATACTGCAAAGCTTGCTGGCCTTCTTGAAAATTTCATCAAGAAGTATGTCCAGTGTTATGGTTGTGGAAATCCTGAAACCGATATCATAATTACTAAGAACCAGATGATCCAGCTAAAATGTGCTGCTTGTGGTTTTGTGTCCGATGTTGATATGAGGGACAAGCTGACTACCTTCATCGTTAAGAATCCTCCAGAAGTAAAGAAAGGTTCCAAAGACAAGAAGGCCATGCGGAGAGCTGAGAAGGAGAGACTCAAGGAAGGTGAAGCAGCTGATGAGGAACAAAAGAAAGGGAAGAAAGAGGTTAAGAAGAAAGGTTCTTCGTCTACAAAGGATGGCACCGCAAAATCCACAATTTCAAAGAAGAAAGGAAGTGGCTCTGATGAAGACCGCACATCGCCTACTCACAGACAAATTGAAGAGAAAGAGGAGGCTCATGACGAAGATGATGATGATGATGATGATGGCGTGCAATGGCTGACAGATACGTCACTTGATGCTGCTCGTCAACGTATCCAAGAACAGTTAAGTGCTGTGACAGCCGATATGGTTATGCTTTCTACAGATGAACCAGGGAAGAAGAAAAAAGCAGCAAGTAATGAAAATGGTGGTTCTCAGAATGGTAACTCAATGAACTACGGGACTGTGGTTGCTGAAGTGAAAGCAAATTTGAAGAAAGGCTTTGGAGCAACTGAATTGCTTTCTCGTCTTGCAGAACTTCCTGCACCTGCTCAAGAAAAGATGACTGCTCTGGTTGAAGCTCTATTTGAGGGAACAGAGAAAGGTTTTGGTAAAGTTACTCTTAAGAAGAAGAACTATTTTACTGCTGCTGTTACAGAGGAGGGATCCCAGATTTTGTTGCTTAATGCCATTGAGGAATTCTGTTGCAAGTCTAATTCCAATGCTTTGAAGGAGGTTGCCCTGGTTCTGAAGACACTGTACGATGCTGATGTGTTGGAGGAAGAGCACGTGGTTATGTGGTATCAAAAGGGACTGAAAGGCGATAACAAGAACTCCAAGATTTGGAAGAATGCTCAACCTTTCATTGACTGGCTTCAGAATGCAGAATCAGAATCGGATGAAGAATAA 1335 0.43 MALQNIGAANSDDAFYRYKMPKMITKIEGRGNGIKTNVVNMVDIAKALARPASYTTKYFGCELGAQSKFDEKTGTSHVNGAHDTAKLAGLLENFIKKYVQCYGCGNPETDIIITKNQMIQLKCAACGFVSDVDMRDKLTTFIVKNPPEVKKGSKDKKAMRRAEKERLKEGEAADEEQKKGKKEVKKKGSSSTKDGTAKSTISKKKGSGSDEDRTSPTHRQIEEKEEAHDEDDDDDDDGVQWLTDTSLDAARQRIQEQLSAVTADMVMLSTDEPGKKKKAASNENGGSQNGNSMNYGTVVAEVKANLKKGFGATELLSRLAELPAPAQEKMTALVEALFEGTEKGFGKVTLKKKNYFTAAVTEEGSQILLLNAIEEFCCKSNSNALKEVALVLKTLYDADVLEEEHVVMWYQKGLKGDNKNSKIWKNAQPFIDWLQNAESESDEE* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g1317 444 Pfam eIF4-gamma/eIF5/eIF2-epsilon 366 444 IPR003307 GO:0005515
Vra4g1317 444 SUPERFAMILY Zinc-binding domain of translation initiation factor 2 beta 98 133 IPR016190 GO:0003743|GO:0006413
Vra4g1317 444 Pfam Domain found in IF2B/IF5 11 127 IPR002735 GO:0003743|GO:0006413
Vra4g1317 444 Gene3D - 2 104 - -
Vra4g1317 444 Gene3D - 105 145 - -
Vra4g1317 444 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 5-1-RELATED 1 444 - -
Vra4g1317 444 MobiDBLite consensus disorder prediction 226 240 - -
Vra4g1317 444 SUPERFAMILY ARM repeat 294 438 IPR016024 -
Vra4g1317 444 SMART 542_3 353 440 IPR003307 GO:0005515
Vra4g1317 444 Gene3D - 291 444 - -
Vra4g1317 444 Coils Coil 159 179 - -
Vra4g1317 444 MobiDBLite consensus disorder prediction 271 292 - -
Vra4g1317 444 MobiDBLite consensus disorder prediction 147 240 - -
Vra4g1317 444 CDD W2_eIF5 298 442 - -
Vra4g1317 444 SMART eIF2Bneu4 15 129 IPR002735 GO:0003743|GO:0006413
Vra4g1317 444 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 1 444 IPR045196 GO:0003743|GO:0006413
Vra4g1317 444 MobiDBLite consensus disorder prediction 148 225 - -
Vra4g1317 444 ProSiteProfiles W2 domain profile. 285 444 IPR003307 GO:0005515
Vra4g1317 444 SUPERFAMILY Translation initiation factor 2 beta, aIF2beta, N-terminal domain 11 101 IPR016189 GO:0003743|GO:0006413
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g1317 Vra-Chr4 19964559 19967303 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g1317 1 437 Eukaryotic Initiation Factors Gene Family AT1G77840 60.579 4.98e-175 495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g1317 4 19964559 19967303 Vra4g1317 4 19964559 19967303 ECH