Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g1316 ATGGCCTTACAAAACATTGGTGCTAGTAACAGTGACGATGCCTTCTACAGGTACAAGATGCCAAGAATGATCACCAAAATTGAGGGCAGAGGTAATGGCATCAAAACAAATGTTGTCAATATGGTTGATATTGCGAAAGCCTTGGCAAGGCCAGCTTCCTACACAACAAAGTATTTCGGATGTGAGCTTGGAGCCCAATCAAAGTTTGATGAGAAAACTGGAACATCCCATGTTAATGGCGCACATGATACTGCAAAACTTGCTGGCCTTCTTGAAATCTTCATCAAGAAATATGTTCAGTGTTATGGTTGTGGAAATCCTGAAACTGATATCTTAATTACTAAGAACCAAATGATCCAGCTGAAATGTGCTGCTTGTGGGTTTGTGTCTGACGTTGATATGAGAGACAAGCTAACTACTTTCATCATTAAAAACCCTCCAGAAGTTAAGAAAGGATCCAAAGACAAGAAGGCTATGAGGAGAGCTGAGAAAGAGAGACTGAAGGAAGGTGAAATGGCTGATGAGGAACAGAAAAAACTGAAGAAAGAGGTTACTAAGAAGAAAGGAACTTCCTCTTCTAAGGATGGTGCTCCGAAATCTACCTCTTCAAGGAAAAAGGCAAATGGCTCCGATGAAGACCGGCCATCGCCTCCCCGCAGTCAAATTGATGAGAATATTGAGGCTCATGACAAGGAAGATGTGGATGACGACATAGAGTGGCAAACCGATACATCACTGGAGGCTGCTCGTCAACGAATCCAGGAACAGCTGAGTGCTGTGACAGCTGATATGGTCATGCTCTCCACAGATGAACCAGAGAAGGAGGAGAAAGCCAGAACTAAGGTAAATGGTAATTCTGAGAATGGTAACTTTTTGACCTATAGGACACTGGTTGCAGAAGTGAAAGCAAATTTGAGTAAAGGTGTCAAGGCAAAAGAGTTGGTGTCCCATCTAGCAGCGCTTCCAGCATCTGCTCAGGAGAAGATGAGTGCTCTGTATGAAGCCCTGTTTGAGGGCATCGAGAAAGGGTTTGCAAAAGAAGCAACTAAGAAGAAGAACTACCTTGCTGCTGCAGTTGCCGAGGAAGAAGGTTTGCAGTTGTTACTGTTGTGTGCAATTGAGGAATTTTCATGTAAGTCTACTTCCAATGCGTTGAAGGAAGTTGCCCTGGTTCTGAAGGCACTCTACGACGCTGATGTGTTGGAGGAAGAGCACATAGTACAGTGGTATCAAAAGGGACTGACGGGCGATAATAAGAACTCTCAGATATGGAAGAATGTTCAGCCGTTCATTGAATGGCTTCAGAATGCAGAATCAGAAACGGATGAAGAATAA 1335 0.4352 MALQNIGASNSDDAFYRYKMPRMITKIEGRGNGIKTNVVNMVDIAKALARPASYTTKYFGCELGAQSKFDEKTGTSHVNGAHDTAKLAGLLEIFIKKYVQCYGCGNPETDILITKNQMIQLKCAACGFVSDVDMRDKLTTFIIKNPPEVKKGSKDKKAMRRAEKERLKEGEMADEEQKKLKKEVTKKKGTSSSKDGAPKSTSSRKKANGSDEDRPSPPRSQIDENIEAHDKEDVDDDIEWQTDTSLEAARQRIQEQLSAVTADMVMLSTDEPEKEEKARTKVNGNSENGNFLTYRTLVAEVKANLSKGVKAKELVSHLAALPASAQEKMSALYEALFEGIEKGFAKEATKKKNYLAAAVAEEEGLQLLLLCAIEEFSCKSTSNALKEVALVLKALYDADVLEEEHIVQWYQKGLTGDNKNSQIWKNVQPFIEWLQNAESETDEE* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g1316 444 MobiDBLite consensus disorder prediction 147 236 - -
Vra4g1316 444 SUPERFAMILY ARM repeat 294 438 IPR016024 -
Vra4g1316 444 Pfam eIF4-gamma/eIF5/eIF2-epsilon 366 444 IPR003307 GO:0005515
Vra4g1316 444 SUPERFAMILY Zinc-binding domain of translation initiation factor 2 beta 98 133 IPR016190 GO:0003743|GO:0006413
Vra4g1316 444 SUPERFAMILY Translation initiation factor 2 beta, aIF2beta, N-terminal domain 10 101 IPR016189 GO:0003743|GO:0006413
Vra4g1316 444 MobiDBLite consensus disorder prediction 148 228 - -
Vra4g1316 444 Gene3D - 2 104 - -
Vra4g1316 444 ProSiteProfiles W2 domain profile. 284 444 IPR003307 GO:0005515
Vra4g1316 444 Gene3D - 285 444 - -
Vra4g1316 444 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 1 444 IPR045196 GO:0003743|GO:0006413
Vra4g1316 444 CDD W2_eIF5 297 442 - -
Vra4g1316 444 SMART 542_3 352 440 IPR003307 GO:0005515
Vra4g1316 444 Gene3D - 105 145 - -
Vra4g1316 444 SMART eIF2Bneu4 15 129 IPR002735 GO:0003743|GO:0006413
Vra4g1316 444 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 5-1-RELATED 1 444 - -
Vra4g1316 444 Pfam Domain found in IF2B/IF5 11 127 IPR002735 GO:0003743|GO:0006413
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g1316 Vra-Chr4 19958218 19961398 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g1316 1 437 Eukaryotic Initiation Factors Gene Family AT1G77840 63.288 1.42e-180 509
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g1316 K03262 - gmx:100777906 718.383