Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g1315 ATGGATGAACATATTATGTCATCTCCTAATAGATTGGTGGAATGTCGAATATGTCACAGTGAGGATGAAGAATCAACCATGGATACACCGTGTTCTTGCTGTGGCACATTGAAGTATGCACACCAAAACTGTGTTCAAAGATGGTGCAATGAGAAAGGTGATACTACATGTGAAATTTGCCAACAGCAACTCAAGCCTGGCTATACTGTACCTCCACTGCCTCCTCTATTACACTATGATTCTTTTGGAGGGAACTGGGAGATTTCAAGAAGGGAGCTTCAAAACCATCAGTTCACAGCAATGTTTAGTGCTGATAATGAATTCCTAGACCTAGACTTTGAGTATTCAGCAGCACCCTCTACAAGAAGCTTGATATTTTGCCGCATTGTTACCATTATTTTTATTGGTCTTCTTCTTCTACGCCATACCCTTCCAATCATATTTATACTCAGAGGAGCAAGAGCATATTCCTTCACTGTGTTTATGTCAGTAGTGTTGACAAATATTGGAATGATGATTGTACCATTTTATATAATGGTTAAAGCTATTATTTCAATCCATCAGTTTCAATGCCAGTCTCCTATGCAAGGACCCCAAGAAAACGATATAGGACAGCCTCAGTTGCGTGTCATTCGTATAAATGATTCAGTGGTAAACTTCAGAGTGGAGTAA 672 0.3929 MDEHIMSSPNRLVECRICHSEDEESTMDTPCSCCGTLKYAHQNCVQRWCNEKGDTTCEICQQQLKPGYTVPPLPPLLHYDSFGGNWEISRRELQNHQFTAMFSADNEFLDLDFEYSAAPSTRSLIFCRIVTIIFIGLLLLRHTLPIIFILRGARAYSFTVFMSVVLTNIGMMIVPFYIMVKAIISIHQFQCQSPMQGPQENDIGQPQLRVIRINDSVVNFRVE* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g1315 223 ProSiteProfiles Zinc finger RING-CH-type profile. 7 67 IPR011016 GO:0008270
Vra4g1315 223 SUPERFAMILY RING/U-box 13 64 - -
Vra4g1315 223 Pfam Protein of unknown function (DUF3675) 66 183 IPR022143 -
Vra4g1315 223 SMART ringv_2 14 61 IPR011016 GO:0008270
Vra4g1315 223 Pfam RING-variant domain 15 60 IPR011016 GO:0008270
Vra4g1315 223 CDD RING_CH-C4HC3_MARCH 15 61 - -
Vra4g1315 223 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 2 196 IPR033275 -
Vra4g1315 223 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 69 IPR013083 -
Vra4g1315 223 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 2 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g1315 Vra-Chr4 19954878 19956490 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g1315 2 61 C3H Transcription Factor Family AT2G37950 41.270 1.48e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g1315 - - var:108321682 437.573
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g1315 4 19954878 19956490 Vra4g1315 4 19954878 19956490 ECH