Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g1300 ATGACTGAAGACAAAAAGGGAATGGCAATAGGAATCGACCTTGGCACAACATACTCCTGTGTTGCAGTATGGCAGCAACAACATAATAGGGTACAGATCATTCATAATGATCAAGGCAACAATACCACTCCTTCTTGTGTTGCTTTCACGGAGCATGAAAGGTTGATAGGAGATGCTGCTAAAAATCAGGCTGCTTCCAATCCAGAGAACACCATCTTCGATGCTAAGAGGTTGATAGGTAGGAAATACAGTGACCCTTTCGTTCAGAAAGACAAAATGTTGTGGCCATTTAAGGTTGTTGCCGGTGTCAAAGACAAACCCATAATTTCTGTGAAATACAAGGGTCAGGAGAAGAGTCTTTGCGCGGAGGAAATATCATCCATGGTCCTCTCAAAGATGCGGGACATTGCAGAGGCATACTTGCAAAAGCCTGTAAAGAATGCGGTGGTTACTGTGCCTGCCTATTTCAATGATTCTCAGCGCAAAGCTACNATGGATGCTGGTGCTATTATAGGTCTCAATGTTATTCGTATAATCAATGAACCTACCGCTGCAGCAATTGCATACGGTCTTGATACGAGAAATGATTGTGTTGGAGAACGAAATATTTTTGTTTTTGACTTTGGAGGAGGTACATTCGATGTGTCTATTCTCACTATTGAGAACAAAGTCTTTCAAGTTAAGGCCACAGCCGGAAACACTCACCTTGGCGGAGAGGACATTGACGATAGAATGATGAACTACTTTGTGGAGGAGATGAAAAGGAAAAGGAAAGTTGACATAGGTGGGAATCCACGTGCCTTAAGGAGGTTGAGGAGTGCTTGCGAGAAAGCAAAAAGGACACTCTCACATGCTGTTACTGCAAACATTGAGGTAGATAATTTATTTCAAGACATTGATTTGTGTTCTTCAATGACCCGAGCAAAATTTGAAGAGATCAATATGGAGCTCTTTGAAGAATGTATGGAAACAGTAGATAGGTGTCTTAAGGATGCTAAGATGGATAAAAGTAGTGTGCATGATGTTGTCCTTGTGGGTGGTTCTTCTAGGATTCCCAAAATGCAGCAGCTACTTGAAGACTTTTTCAATGGAAAGGATCTTTGCAAGAGCCTAAACCCTGATGAGGCTGTTGCTTATGGTGCGGCTGTGCAGGCTGCTCTCTTGACTGAAGGCATTAAGAATGTTCCAGATTTGGTATTGAAAGATGTTACTCCGCTTTCACTTGGCGTATCGGTACAGGGGGATCTCATGAATGTTGTGATTCCTAGGAACACTACTATTCCTATAACGAAGAAACAAGTTATTGAGACACTCGAAGATGACCAATATTCAGTTTGGCTTCCGGTTTGTGAGGGCGAGAGAGCAAAAGGAAGTGATAATAATTTGTTGGGTTCTATAACTATTTCTGGCTTACCCCCAGCTCCTCGTGGCTATTCTTTTGATTTGACTTTTACAATAGATGAAAATGGCATTCTTTCTGTTTCTGCTGAGGATAAAGTTACCGGTAATTGGGAAGAAGTTATAATATCTAATAACAAAGGAAGACTATCAAAAGCAGAAATTAGTAAAATGATTAAAGAAGCAGAGAATTATAAGTCTGAAGATGAGAAGTTTCTTAAAAAGACCAATGCAATGAATGATTTAGATTATCATGTTTATAAGATCGGAAAGGCTTTAAAGAGAGAGGATATCAGCTCAAAGTTGTGCTCGAAAGAAAAGGAAGATATCATGGATAAAATTTCTAGAGTCACTGATATACTTGATAGGCGGGACGAGATGGAAGATATAGTTGCTATTGAATACTTTCTGAAAGATCTAAAAGCAATCGATGAACAAATTATGGTATTGGAAAAGGTTGGTAAAAGGAAAAGAGAGTCATAG 1881 0.3987 MTEDKKGMAIGIDLGTTYSCVAVWQQQHNRVQIIHNDQGNNTTPSCVAFTEHERLIGDAAKNQAASNPENTIFDAKRLIGRKYSDPFVQKDKMLWPFKVVAGVKDKPIISVKYKGQEKSLCAEEISSMVLSKMRDIAEAYLQKPVKNAVVTVPAYFNDSQRKATMDAGAIIGLNVIRIINEPTAAAIAYGLDTRNDCVGERNIFVFDFGGGTFDVSILTIENKVFQVKATAGNTHLGGEDIDDRMMNYFVEEMKRKRKVDIGGNPRALRRLRSACEKAKRTLSHAVTANIEVDNLFQDIDLCSSMTRAKFEEINMELFEECMETVDRCLKDAKMDKSSVHDVVLVGGSSRIPKMQQLLEDFFNGKDLCKSLNPDEAVAYGAAVQAALLTEGIKNVPDLVLKDVTPLSLGVSVQGDLMNVVIPRNTTIPITKKQVIETLEDDQYSVWLPVCEGERAKGSDNNLLGSITISGLPPAPRGYSFDLTFTIDENGILSVSAEDKVTGNWEEVIISNNKGRLSKAEISKMIKEAENYKSEDEKFLKKTNAMNDLDYHVYKIGKALKREDISSKLCSKEKEDIMDKISRVTDILDRRDEMEDIVAIEYFLKDLKAIDEQIMVLEKVGKRKRES* 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g1300 626 ProSitePatterns Heat shock hsp70 proteins family signature 3. 342 356 IPR018181 -
Vra4g1300 626 SUPERFAMILY Actin-like ATPase domain 7 192 IPR043129 -
Vra4g1300 626 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 385 514 IPR029047 -
Vra4g1300 626 PANTHER HEAT SHOCK 70 KDA PROTEIN 4 615 - -
Vra4g1300 626 Gene3D Actin; Chain A, domain 4 237 320 - -
Vra4g1300 626 Pfam Hsp70 protein 9 608 IPR013126 GO:0005524|GO:0140662
Vra4g1300 626 ProSitePatterns Heat shock hsp70 proteins family signature 2. 205 218 IPR018181 -
Vra4g1300 626 PANTHER HEAT SHOCK PROTEIN 70KDA 4 615 IPR013126 GO:0005524|GO:0140662
Vra4g1300 626 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Vra4g1300 626 Gene3D - 516 617 IPR029048 -
Vra4g1300 626 Gene3D - 10 384 - -
Vra4g1300 626 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 394 548 IPR029047 -
Vra4g1300 626 Gene3D - 73 128 - -
Vra4g1300 626 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 544 614 IPR029048 -
Vra4g1300 626 SUPERFAMILY Actin-like ATPase domain 200 388 IPR043129 -
Vra4g1300 626 Gene3D - 194 368 - -
Vra4g1300 626 PRINTS 70kDa heat shock protein signature 8 21 - -
Vra4g1300 626 PRINTS 70kDa heat shock protein signature 38 50 - -
Vra4g1300 626 PRINTS 70kDa heat shock protein signature 60 68 - -
Vra4g1300 626 PRINTS 70kDa heat shock protein signature 148 168 - -
Vra4g1300 626 PRINTS 70kDa heat shock protein signature 211 221 - -
Vra4g1300 626 PRINTS 70kDa heat shock protein signature 339 355 - -
Vra4g1300 626 PRINTS 70kDa heat shock protein signature 371 391 - -
Vra4g1300 626 PRINTS 70kDa heat shock protein signature 397 416 - -
Vra4g1300 626 PRINTS 70kDa heat shock protein signature 477 493 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g1300 Vra-Chr4 19844677 19846699 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g1300 1 595 Calmodulin-binding Proteins AT3G12580 65.116 0.0 796