Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g1296 ATGGCCGAAGACAAAATGGGATTGGCAATAGGAATCGACCTTGGCACAACATACTCCTGTGTTGCAGTATGGCAGCAACAACATAATAGGGTGGAGATCATTCATAATGATCAAGGCAACCATACCACTCCTTCTTGTGTTGCTTTCACCGACCATGAAAGGTTGATAGGAGATGCTGCTAAAAATCAGGCTGCTTCCAATCCAGAGAACACCATTTTTGATGCTAAGAGGTTGATCGGTAGGAACTACAGTGACCCACTTGTTCAGAAAGACAAAATGTTGTGGCCATTTAAGGTTGTTGCCGGTGTCAATGACAAACCCATGATTTCTGTTAAGTACAAGGGTCAGGAGAAGTTCGATGTGTCTATTCTCACTATTCAGAACAAAGTCTTTCAAGTTAAGTTTCAAGTTAAGGCCACTGCCGGAAACACTCACCTTGGCGGAGAGGACATTGATAATAGAATAATTAACTACTTTGTAGAGGAGATGAAAAGGAAAAGTAAAGTTGACATAAGTGGGAACCCACGTGCCTTAAGGAGGTTGAGAAGTGCTTGCGAGAGAGCAAAAAGGACACTGTCATATGCTGTTACTGCAAGCATAGAGATAGATGGTTTATTTGAAGGCACTGATTTGCTTTCTTCAATAACCCGAGCAAAATTTGAAGAAATCAATATGGAGGTCTTTGAAGAGTGTATGGAAACAGTAGATAGGTGTCTTAGGGATGCTAAGCTGGAGAAAAGTAGTGTGCATGATGTTGTCCTTGTGGGTGGTTCTTCTAGGATTCCCAAAATGCAGCAGCTACTTGAAGACTTTTTCAATGGGAAGGATCTTTGCAAGAGCGTAAACCCTGATAAAGTTGTTGCTTATGGTGCAGCTGTGCAGGCTGCTCTCTTGACTGAAGGCATTAAGAATGTTCCAGATTTGGTATTGAAAGATGTTACTCCGCTTTCACTTGGCACAGCGATACTAGGGAATCTCATGAGTGTTGTGATTCCTAGGAACACTACTATTCCAATAAAGAAGAATAAAGTTTTTGTAACAGTCGAAGATTACCAATTTTCAAGCTATATTCCGGTTTATGAGGGCGAGAGAGTGAAAGCCAGTGATAATAATTTGTTGGGTTATTTTAATTTTTCTGGCCATCCTCCAGCTGCTCGTGGCTATCCGTATGATGTGACTTTTGCTATAAATGAAAATGGCATTCTTTCCGTTTCTGCTAAGGATAAAGTAACCGGTAATAGGAATGGAATTATAATATCCAATAACAAAGAAAGACTGTCAAATGCAGAAATTAGTAAAATGATTAAAGAAGCAGAGAATTATAAGTCTGAAGATGAGAAGTTTCTTAAGAAGGCCAAAGCAATGAATGACTTAGATTATCATGTTTATAAGATCGGAAAGGCTTTAAAGAGAGAGGATATAAGCTCAAAGTTGAGCTGGAAAGAAAAGGAAGATATAATGTCTAAAATTTCTAGAGCCACTGATATTATCATTTGA 1497 0.3928 MAEDKMGLAIGIDLGTTYSCVAVWQQQHNRVEIIHNDQGNHTTPSCVAFTDHERLIGDAAKNQAASNPENTIFDAKRLIGRNYSDPLVQKDKMLWPFKVVAGVNDKPMISVKYKGQEKFDVSILTIQNKVFQVKFQVKATAGNTHLGGEDIDNRIINYFVEEMKRKSKVDISGNPRALRRLRSACERAKRTLSYAVTASIEIDGLFEGTDLLSSITRAKFEEINMEVFEECMETVDRCLRDAKLEKSSVHDVVLVGGSSRIPKMQQLLEDFFNGKDLCKSVNPDKVVAYGAAVQAALLTEGIKNVPDLVLKDVTPLSLGTAILGNLMSVVIPRNTTIPIKKNKVFVTVEDYQFSSYIPVYEGERVKASDNNLLGYFNFSGHPPAARGYPYDVTFAINENGILSVSAKDKVTGNRNGIIISNNKERLSNAEISKMIKEAENYKSEDEKFLKKAKAMNDLDYHVYKIGKALKREDISSKLSWKEKEDIMSKISRATDIII* 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g1296 498 Gene3D - 284 293 - -
Vra4g1296 498 ProSitePatterns Heat shock hsp70 proteins family signature 3. 252 266 IPR018181 -
Vra4g1296 498 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Vra4g1296 498 Gene3D - 115 283 - -
Vra4g1296 498 Pfam Hsp70 protein 115 492 IPR013126 GO:0005524|GO:0140662
Vra4g1296 498 PANTHER HEAT SHOCK 70 KDA PROTEIN 5 118 - -
Vra4g1296 498 PANTHER HEAT SHOCK 70 KDA PROTEIN 119 497 - -
Vra4g1296 498 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 304 459 IPR029047 -
Vra4g1296 498 Gene3D - 1 111 - -
Vra4g1296 498 Gene3D Actin; Chain A, domain 4 147 224 - -
Vra4g1296 498 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 299 478 IPR029047 -
Vra4g1296 498 PRINTS 70kDa heat shock protein signature 8 21 - -
Vra4g1296 498 PRINTS 70kDa heat shock protein signature 38 50 - -
Vra4g1296 498 PRINTS 70kDa heat shock protein signature 60 68 - -
Vra4g1296 498 PRINTS 70kDa heat shock protein signature 387 403 - -
Vra4g1296 498 SUPERFAMILY Actin-like ATPase domain 115 298 IPR043129 -
Vra4g1296 498 SUPERFAMILY Actin-like ATPase domain 6 119 IPR043129 -
Vra4g1296 498 PANTHER HEAT SHOCK PROTEIN 70KDA 119 497 IPR013126 GO:0005524|GO:0140662
Vra4g1296 498 PANTHER HEAT SHOCK PROTEIN 70KDA 5 118 IPR013126 GO:0005524|GO:0140662
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g1296 Vra-Chr4 19781125 19786860 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g1296 115 493 Calmodulin-binding Proteins AT3G12580 60.892 1.40e-159 466