Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g1295 ATGGCAAAACAAAACAAGGAATGGGTTGTGGGAATCGACCTTGGCACAACATATTCATGTGTTGCTGTGTGGCTTGAAGAACACTGTCGAGTGGAGATCATTCACAATGACCAGGGCAATAGAACTACGTCTTCTTGTGTGGCTTTCACAGAGAATCAAAGATTGATTGGTGATGCTGCTAAGAATCAGGCTGCCATGAACCCGACCAACACTCTCTTTGATGTGAAAAGGTTAATCGGCAGAAAATATAGTGATCCCATCATTCAGGACGATCTAAAGTTGTGGCCATTTAAGGTCATTGCTGATTCTGATGACAAGCCCATGATGGTCCTTTCATACAAGGGTCAGGAGAAACAATTTTCAGCTGAAGAAATCTCATCTATGGTCCTTACAAAGATGCGGGAGATTGCAGAAGCATACTTGGAATCAGAGGTTAAGAATGTTGTGGTTACCGTGCCTGCTTATTTTAATGATTCTCAGCGACAAGCAACAAAAGATGCTGGTACCATTGCTGGCCTCAATGTTATGCGGATAATCAATGAGCCCACAGCTGCTGCTCTGGCATATGGTCTTGACAAGAGAGCTAATTGTGTTGGAAAGCGGAATATTTTAATTTTTGATTTTGGTGGTGGAACATTTGATGTGTCTCTGCTAACAATAAAAGGTGATGTCTTTGAAGTGAAGGCCACTGCTGGTGACACACACCTTGGAGGAGAAGACATGGATAACAGAATGGTGAAATACTTTGTTGAGGAGATCAAGAGAAAGCAGAAAGTGGACATTAGTGGAAACCCGAGAGCCTTGAGGAGGTTGAGAACTGCTTGTGAGAGAGCAAAAAGGACACTCTCATATGCTGTTGATACCACCATTCAGATAGATGCTTTATCTGGGGGCATTGACTTCTTCTCATCAATCACTCGTGCAAGATTTGAGAAACTTAACTTGGACCTCCTTAAAAGGTGTATGGAGACAGTAGACAGGTGTCTTGTTGATTCTAAGATGGACAAGAGTGATGTAGACGATGTTGTACTTGTTGGTGGTTCTTCTAGGATTCCCAAGGTACAGCAGCTATTGCAAGACTACTTCAAGGGGAAAGAACTGTGCATGAGCATCAACCCTGACGAGGCTGTTGCCTATGGAGCAGCAGTACAGGCTGCTTTGCTGACTAAAGGCAACAAGTTTGTCCCCAACTTAGTGTTATTAGATGTTACGCCGCTGTCACTTGGTATATCTGTAATAGAAGATCTCATGGATGTCGTGATTCCTAGGAACACCACCATTCCCGTTGTAAAAAAGAAAGAATATAAGAGAGCCAAAGATTTCCAATCTGCTGTCCCTATTAATGTTTACGAGGGTGAAAGGACAAGAGCAAGCGATAACAATTTGCTTGGTTTCTTTAATCTTTATGGCAATCCTAAAGCTCTTCGAGGCCATCCTTTAACTGTATGTTTCAGTATTGATACTGATGGTATCCTAACTGTAATTGCCGAGGAAAAAAGCAGTGGAAGGAAGAATTGGATTACTGTAACCAACGACAAGGGAAAACTATCAACTCAACAAATTTTGAGAATGATTCAAGAAGGCGAGAAATACAAGGCTGAAGATCAGAAGTACCAAAAGAAAGTTTTGGCAATTAATGCTTTGGATGACTTCGTTTACAAGATAAGGAATGCTATAGATGATGTAGATAATCCACAAGAGAAAACGAAGATCAACATGGCTATTGCAGAGGCCGAGAAATTGCTTGATGCTAGGGAGAAGACGGAAACAGAGGTTTTTGTGGATCATCTGCACAGGATGAAGAGCCTCATTGAACCCATTATGAAGATTAACTAG 1836 0.4178 MAKQNKEWVVGIDLGTTYSCVAVWLEEHCRVEIIHNDQGNRTTSSCVAFTENQRLIGDAAKNQAAMNPTNTLFDVKRLIGRKYSDPIIQDDLKLWPFKVIADSDDKPMMVLSYKGQEKQFSAEEISSMVLTKMREIAEAYLESEVKNVVVTVPAYFNDSQRQATKDAGTIAGLNVMRIINEPTAAALAYGLDKRANCVGKRNILIFDFGGGTFDVSLLTIKGDVFEVKATAGDTHLGGEDMDNRMVKYFVEEIKRKQKVDISGNPRALRRLRTACERAKRTLSYAVDTTIQIDALSGGIDFFSSITRARFEKLNLDLLKRCMETVDRCLVDSKMDKSDVDDVVLVGGSSRIPKVQQLLQDYFKGKELCMSINPDEAVAYGAAVQAALLTKGNKFVPNLVLLDVTPLSLGISVIEDLMDVVIPRNTTIPVVKKKEYKRAKDFQSAVPINVYEGERTRASDNNLLGFFNLYGNPKALRGHPLTVCFSIDTDGILTVIAEEKSSGRKNWITVTNDKGKLSTQQILRMIQEGEKYKAEDQKYQKKVLAINALDDFVYKIRNAIDDVDNPQEKTKINMAIAEAEKLLDAREKTETEVFVDHLHRMKSLIEPIMKIN* 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g1295 611 Pfam Hsp70 protein 9 609 IPR013126 GO:0005524|GO:0140662
Vra4g1295 611 ProSitePatterns Heat shock hsp70 proteins family signature 3. 342 356 IPR018181 -
Vra4g1295 611 Gene3D - 73 128 - -
Vra4g1295 611 SUPERFAMILY Actin-like ATPase domain 200 388 IPR043129 -
Vra4g1295 611 PANTHER HEAT SHOCK PROTEIN 70KDA 8 609 IPR013126 GO:0005524|GO:0140662
Vra4g1295 611 ProSitePatterns Heat shock hsp70 proteins family signature 2. 205 218 IPR018181 -
Vra4g1295 611 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 396 549 IPR029047 -
Vra4g1295 611 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Vra4g1295 611 PRINTS 70kDa heat shock protein signature 8 21 - -
Vra4g1295 611 PRINTS 70kDa heat shock protein signature 38 50 - -
Vra4g1295 611 PRINTS 70kDa heat shock protein signature 60 68 - -
Vra4g1295 611 PRINTS 70kDa heat shock protein signature 148 168 - -
Vra4g1295 611 PRINTS 70kDa heat shock protein signature 211 221 - -
Vra4g1295 611 PRINTS 70kDa heat shock protein signature 339 355 - -
Vra4g1295 611 PRINTS 70kDa heat shock protein signature 371 391 - -
Vra4g1295 611 PRINTS 70kDa heat shock protein signature 397 416 - -
Vra4g1295 611 PRINTS 70kDa heat shock protein signature 477 493 - -
Vra4g1295 611 PANTHER HEAT SHOCK 70 KDA PROTEIN 8 609 - -
Vra4g1295 611 Gene3D - 546 610 IPR029048 -
Vra4g1295 611 Gene3D Actin; Chain A, domain 4 237 320 - -
Vra4g1295 611 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 544 608 IPR029048 -
Vra4g1295 611 Coils Coil 571 591 - -
Vra4g1295 611 Gene3D - 10 386 - -
Vra4g1295 611 Gene3D - 194 368 - -
Vra4g1295 611 SUPERFAMILY Actin-like ATPase domain 8 193 IPR043129 -
Vra4g1295 611 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 394 545 IPR029047 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g1295 Vra-Chr4 19778883 19781118 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g1295 1 608 Calmodulin-binding Proteins AT3G12580 66.016 0.0 821