Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g1283 ATGGCCGGAAAAGGAGATGGACCTGCCATTGGAATCGATCTCGGCACCACCTACTCCTGTGTTGGAGTGTGGCAGCATGACCGGGTAGAAATTATTGCCAATGACCAGGGTAACAGGACGACGCCTTCTTACGTCGCTTTCACCGATTCCGAACGGTTGATCGGTGACGCTGCCAAGAATCAGGTCGCCATGAACCCTATCAACACCGTTTTCGATGCCAAGCGTTTGATTGGAAGGAGATTTTCTGATACAACCGTCCAGAGTGACGTGAAGTTGTGGCCATTCAAAGTTGTTGCGGGTCCTGCTGACAAACCTATGATTGTTGTAAACTACAAGGGCGAGGAGAAGCAGTTTGCTGCCGAGGAGATTTCCTCTATGGTCCTCATGAAGATGCGTGAGATTGCCGAGGCTTATCTCGGATCAGCCGTAAAGAATGCTGTGGTCACAGTTCCTGCATACTTCAATGATTCCCAGCGTCAGGCTACAAAGGATGCTGGAGTCATTGCTGGCCTTAATGTCATGCGTATCATCAACGAACCCACCGCCGCTGCCATTGCTTATGGTCTTGACAAGAAGGCCTCTAGTGTGGGTGAGAAGAACGTGTTGATCTTTGATTTGGGTGGTGGTACTTTTGATGTCTCTCTTCTTACTATTGAGGAGGGCATTTTTGAAGTTAAGGCCACTGCTGGAGATACTCATCTTGGAGGTGAAGATTTTGACAACAGAATGGTTAACCATTTTGTTCAGGAGTTTAAGAGGAAACACAAGAAGGATATTAGTGGGAACCCAAGGGCGCTTAGGCGATTGAGGACTGCCTGTGAGAGGGCGAAGAGGACTCTCTCGTCTACTGCACAGACCACAATTGAGATTGATTCTCTTTACGAAGGTGTTGACTTCTACACAACTATCACCCGTGCTAGGTTTGAGGAGCTTAACATGGATCTGTTCAGAAAGTGTATGGAACCTGTTGAAAAGTGTCTGAGGGATGCGAAGATGGACAAGAGCTCCGTCCACGATGTTGTCCTAGTTGGTGGATCCACTAGAATTCCCAAAGTGCAGCAGCTGTTGCAAGATTTCTTTAATGGCAAGGAACTTTGCAAGAGTATCAATCCAGACGAGGCTGTTGCCTATGGAGCTGCTGTTCAGGCAGCAATATTGAGCGGCGAGGGTAATGAGAAAGTGCAGGACCTGTTGCTGTTGGACGTTACACCCCTTTCTCTTGGTTTGGAAACTGCCGGTGGTGTCATGACTGTTCTCATTCCAAGGAACACCACCATTCCAACCAAGAAGGAGCAAGTGTTCTCTACTTACTCCGACAACCAACCCGGTGTCTTGATTCAGGTATTCGAGGGAGAGAGAGCCAGAACCAGGGACAACAACTTGTTGGGTAAATTTGAGCTTTCTGGCATTCCACCAGCACCTAGAGGTGTTCCTCAGATCACCGTTTGCTTTGACATAGATGCAAACGGTATCTTGAATGTCTCAGCAGAGGACAAGACCACCGGGCAGAAAAACAAGATTACTATTACAAATGACAAGGGTAGACTCTCGAAGGAGGATATTGAGAAGATGGTCCAGGAGGCAGAGAAGTATAAGGCAGAGGATGAGGAGCACAAGAAGAAGGTGGATGCAAAGAATGCACTGGAAAATTATGCCTACAACATGAGGAACACTATTAAGGATGAGAAAATTGCTTCTAAGCTTTCTGCCGATGATAAAAAGAAGATTGAAGATGCTATTGAGAGTGCTATTCATTGGTTGGACAGCAACCAACTTGCCGAAGCAGATGAGTTCGAAGACAAGATGAAGGAGCTGGAGAGCATTTGCAACCCAATAATTGCGAAGATGTACCAAGGTGCCGGTGCTCCCGACATACCTGGAGGCATGGATGAAGATATTCCTGCATCTGCATCTGGTGGTGCTGGTCCCAAGATCGAAGAAGTTGATTAA 1950 0.4728 MAGKGDGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDSERLIGDAAKNQVAMNPINTVFDAKRLIGRRFSDTTVQSDVKLWPFKVVAGPADKPMIVVNYKGEEKQFAAEEISSMVLMKMREIAEAYLGSAVKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKASSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKHKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGVDFYTTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVFEGERARTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEDIEKMVQEAEKYKAEDEEHKKKVDAKNALENYAYNMRNTIKDEKIASKLSADDKKKIEDAIESAIHWLDSNQLAEADEFEDKMKELESICNPIIAKMYQGAGAPDIPGGMDEDIPASASGGAGPKIEEVD* 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g1283 649 Pfam Hsp70 protein 9 618 IPR013126 GO:0005524|GO:0140662
Vra4g1283 649 Gene3D - 71 126 - -
Vra4g1283 649 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 543 624 IPR029048 -
Vra4g1283 649 ProSitePatterns Heat shock hsp70 proteins family signature 2. 203 216 IPR018181 -
Vra4g1283 649 Gene3D - 192 366 - -
Vra4g1283 649 SUPERFAMILY Actin-like ATPase domain 8 191 IPR043129 -
Vra4g1283 649 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Vra4g1283 649 ProSitePatterns Heat shock hsp70 proteins family signature 3. 340 354 IPR018181 -
Vra4g1283 649 Coils Coil 521 541 - -
Vra4g1283 649 Gene3D Actin; Chain A, domain 4 235 318 - -
Vra4g1283 649 Gene3D - 539 649 IPR029048 -
Vra4g1283 649 PRINTS 70kDa heat shock protein signature 8 21 - -
Vra4g1283 649 PRINTS 70kDa heat shock protein signature 36 48 - -
Vra4g1283 649 PRINTS 70kDa heat shock protein signature 58 66 - -
Vra4g1283 649 PRINTS 70kDa heat shock protein signature 146 166 - -
Vra4g1283 649 PRINTS 70kDa heat shock protein signature 209 219 - -
Vra4g1283 649 PRINTS 70kDa heat shock protein signature 337 353 - -
Vra4g1283 649 PRINTS 70kDa heat shock protein signature 369 389 - -
Vra4g1283 649 PRINTS 70kDa heat shock protein signature 396 415 - -
Vra4g1283 649 PRINTS 70kDa heat shock protein signature 477 493 - -
Vra4g1283 649 Gene3D - 10 384 - -
Vra4g1283 649 MobiDBLite consensus disorder prediction 621 649 - -
Vra4g1283 649 PANTHER HEAT SHOCK COGNATE 70 KDA PROTEIN 2-LIKE 1 629 - -
Vra4g1283 649 SUPERFAMILY Actin-like ATPase domain 198 388 IPR043129 -
Vra4g1283 649 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 389 531 IPR029047 -
Vra4g1283 649 CDD HSPA1-2_6-8-like_NBD 9 387 - -
Vra4g1283 649 PANTHER HEAT SHOCK PROTEIN 70KDA 1 629 IPR013126 GO:0005524|GO:0140662
Vra4g1283 649 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 392 549 IPR029047 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g1283 Vra-Chr4 19713753 19716612 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g1283 1 649 Calmodulin-binding Proteins AT3G12580 93.395 0.0 1233