Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g1280 ATGGGTGCTATTAAATTCAAGTATGTGGTTGACTTGCATCAACTACATACTAAAAGCACTTCACAAAAAAGAAAAAGCATCATGATCTTTAGAACACTTGTCCTATTTCTGGCTTTTATGGTGGCAAATTCAACAGCTCTTGCGGATCAACAAACATATATAGTTCACATTGACAAGACTAAGATCAGAGCCTCAATTCATTCTCAAGACAGCTCAAAGCCATGGTTTGAATCCATCATTGATTTTATTTCTGAAGCTGCAACGCAAGAAGACGGAGAAGAAGAGATTTTAGCCCCTCAACTCCTTTATGCCTATGAAACCAGCATGTTTGGTTTTGCTGCCCATCTTTCCAAGAAACACCTCAAATACTTGAATCAAGTTGAGGGTTTCCTCTCAGCCATACCTGATGAACTATCAACACTCCACACAACGTACAGCCCACAGTTTCTTGGCCTGAGGAGTAGAAGAGAACTTTGGACTGCTTCTAACTTGGCCAATGATGTGATCATTGGGGTTCTTGATTCAGGAATATGGCCTGAACACACCAGTTTCCAAGACTCAGGTTTGTCCCCAGTGCCTTCTCATTGGAAAGGTGTTTGTGAGAAAGGCACTAAGTTCTCTTCCTCAAATTGCAACAAGAAGCTTATTGGTGCAAGAGCCTATTTCAAGGGGTATGAAAAATATTTTGGAAAAAAAATCAATGAAACAGTGGATTACCTTTCTCCAAGAGATTCCCAGGGGCATGGAACACACACTGCCTCAACTGCAGCAGGTGATATGGTGAAAAATGCCAACTTTCTTGGCCAGGCTAGAGGTACAGCAACTGGAATGAGGTATACTTCTAGAATTGCAGCTTATAAAGTATGCTGGTCTTCTGGTTGTACTAATTCTGATGTATTAGCTGCTATGGACCAAGCAGTTTCTGATGGGGTTGATGTGTTGTCACTCTCTTTAGGGAGTATTCCCAAACCTTTTTACAGTGATAGTATTGCCATAGCTTCATTTGGGGCAACCCAGAAAGGGGTTTTGGTTGCTTGCTCCGCAGGCAATTCAGGCCCTTTTCCATCAACGGTTGGAAATGGTGCTCCATGGATCATGACAGTTGCTGCTAGCTCCACCGACCGAACCTTTCCAACAAAAGTAAAACTTGGGAATGGACAAATTTTCAAAGGGTCATCTTTATATCAAGGTAAGAAGACAACCCAAATGCCCCTTGTGTATGGCAAATCAGCAGGTGCAACCAAGGAAGCACAGTATTGCACTGGAGGCTCCCTTGATCCAAAGCTTGTGCATGGGAAAATAGTTGCTTGTGAAAGAGGAATAAATGGTAGAACTGAGAAAGGAGAGGAAGTGAAAGTGGCAGGTGGGTCTGGAATGATTCTTCTCAACAATGAATACCAAGGAGAAGAGCTTTTTGCTGACCCTCATATTCTGCCAGCCACATCCTTGGGGGCTTCTGCAAGCAAGATTATCAGAAGCTATAGTGAATCTGTTAAAAAACCAACAGCTTCAATTTCCTTTATGGGGACAAAGTTCAGGGACCCTGCACCAGTGATGGCAGCATTTTCTTCAAGAGGACCAAGTTTAGTGGGATCAGATGTGATTAAGCCTGATGTGACTGCACCTGGTGTGAACATTTTGGCTGCTTGGCCACCCAAAATTAGCCCAAGCTTTCTCAAGAGTGACAAAAGAAAAGTATCATTCAACATACTTTCAGGTACTTCAATGTCTTGTCCTCATGTCAGTGGCATAGCAGCACTGCTCAAGTCTTTGCACAAAGATTGGTCCCCTGCAGCCATTAAATCTGCTCTCATGACTACTGCATACACATTGAACAACAAAGGAGCTCCAATTTCAGACATGGCTTCTAATGACTCACCATTGGCTACTCCCTTTGTATATGGTTCAGGCCATGTTAACCCTGTAAGTGCTTCTGATCCAGGGTTAGTGTATGATATCAGCACCAAAGACTACTTCAATTATCTTTGCAGCATAAACTATACTTCTTCCCAGATTGCTTTATTATCAAGAAGTAACTTAGTATGTTCTAGAAAAGCAGTTCTAAAAGCTGGTGACTTGAACTACCCTTCATTTGCTGTTCTATTTGGCAGAAGTTCCTTTAATTCTAGTGTGACATACAGAAGGGTTGTCACAAATGTTGGAAAATCCCGAAGTTCTTATGCAGTTAAAGTGGAACAACCGAATGGAGTTTCAGTTAGTGTTGAACCAAGGAAATTGAAGTTTGAAAAACTGGGTCAGAAATTAAGCTATAATGTGACATTTTTGGCAACTGGAGGAGGTAAAATTGCTGGTAGTTCATCATTTGGGTCACTGATTTGGGTATCTGACAGATATAAAGTTACAAGTCCTATAGCAATAACCTGGCAATAG 2391 0.4174 MGAIKFKYVVDLHQLHTKSTSQKRKSIMIFRTLVLFLAFMVANSTALADQQTYIVHIDKTKIRASIHSQDSSKPWFESIIDFISEAATQEDGEEEILAPQLLYAYETSMFGFAAHLSKKHLKYLNQVEGFLSAIPDELSTLHTTYSPQFLGLRSRRELWTASNLANDVIIGVLDSGIWPEHTSFQDSGLSPVPSHWKGVCEKGTKFSSSNCNKKLIGARAYFKGYEKYFGKKINETVDYLSPRDSQGHGTHTASTAAGDMVKNANFLGQARGTATGMRYTSRIAAYKVCWSSGCTNSDVLAAMDQAVSDGVDVLSLSLGSIPKPFYSDSIAIASFGATQKGVLVACSAGNSGPFPSTVGNGAPWIMTVAASSTDRTFPTKVKLGNGQIFKGSSLYQGKKTTQMPLVYGKSAGATKEAQYCTGGSLDPKLVHGKIVACERGINGRTEKGEEVKVAGGSGMILLNNEYQGEELFADPHILPATSLGASASKIIRSYSESVKKPTASISFMGTKFRDPAPVMAAFSSRGPSLVGSDVIKPDVTAPGVNILAAWPPKISPSFLKSDKRKVSFNILSGTSMSCPHVSGIAALLKSLHKDWSPAAIKSALMTTAYTLNNKGAPISDMASNDSPLATPFVYGSGHVNPVSASDPGLVYDISTKDYFNYLCSINYTSSQIALLSRSNLVCSRKAVLKAGDLNYPSFAVLFGRSSFNSSVTYRRVVTNVGKSRSSYAVKVEQPNGVSVSVEPRKLKFEKLGQKLSYNVTFLATGGGKIAGSSSFGSLIWVSDRYKVTSPIAITWQ* 797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g1280 796 ProSitePatterns Serine proteases, subtilase family, aspartic acid active site. 170 181 IPR023827 -
Vra4g1280 796 ProSitePatterns Serine proteases, subtilase family, serine active site. 573 583 IPR023828 -
Vra4g1280 796 Gene3D Peptidase S8/S53 domain 167 658 IPR036852 GO:0004252|GO:0006508
Vra4g1280 796 CDD Peptidases_S8_3 140 609 IPR034197 -
Vra4g1280 796 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 39 142 IPR037045 -
Vra4g1280 796 ProSiteProfiles Serine proteases, subtilase domain profile. 144 645 - -
Vra4g1280 796 PANTHER SUBTILISIN-LIKE PROTEASE SBT1.1 42 796 - -
Vra4g1280 796 SUPERFAMILY Subtilisin-like 141 649 IPR036852 GO:0004252|GO:0006508
Vra4g1280 796 CDD PA_subtilisin_like 381 505 - -
Vra4g1280 796 PRINTS Subtilisin serine protease family (S8) signature 165 184 IPR015500 -
Vra4g1280 796 PRINTS Subtilisin serine protease family (S8) signature 244 257 IPR015500 -
Vra4g1280 796 PRINTS Subtilisin serine protease family (S8) signature 572 588 IPR015500 -
Vra4g1280 796 Pfam Peptidase inhibitor I9 52 139 IPR010259 -
Vra4g1280 796 Pfam Subtilase family 166 614 IPR000209 GO:0006508|GO:0008236
Vra4g1280 796 Pfam PA domain 403 487 IPR003137 -
Vra4g1280 796 Pfam Fibronectin type-III domain 692 793 IPR041469 -
Vra4g1280 796 Gene3D - 662 795 - -
Vra4g1280 796 Gene3D - 374 512 - -
Vra4g1280 796 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 42 796 IPR045051 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g1280 Vra-Chr4 19693364 19696817 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g1280 50 796 Subtilisin-like Serine Gene Family AT1G01900 54.473 0.0 809
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g1280 - - gmx:100790006 1362.44