Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g1279 ATGGATAACTATGGATCATCTTCTCCATACCGGTATCCAATCCCATATGGGTACCCTCCCAACCCTCATCAACCATACCCTCCTCCTCCAGTTTCAGCTCCTGATCCATATGCACAAGCTCCTTATCCTTCATATCCTTACCTTTCTTCACATTCCTTCAACTATTCTCACCATGGACCTCCTAGACCTTCTTCACATTCTGGCCATTTTGAGTATTCTTATCCTCCTAACGCCATGGATTTTTCTCACCCTCCTCCACCATCTTATGCTCCTCCTCCCACTTATCCTTATCCCTACCATGTGCCTCCACCAAATCATGGCTCTCCCGGGCCTCCCCCTTTTCACCAGCCCAGTTACCAATATGGTTCACCTCAATACCATTATCCACCAAAAGAGTCCTATTCGCCGCCTCCTGATATCCATTCCGGCACCAATAGCTTCTCTAGTCCCTATTGGCAGGATGATACAAGCACTGCTGAAGGAGGTAAAGTGTCACAAAGTAGTGACAATTCCATTTCCATGCATTCTCAGGGTTCTTCTTACCCAGCTTTGGATGATCTTATGAGCAATGTTAGGTTGTCTGATGGCCAACCAACTGCTCCTGCATCACCTCCTGCGCCTGCAGGGCATCCGCTTATGCATTCTATTTCAGTTCCTAAGTTGCAACAGAAGAAGGAGGAGTTTTATGGATATTCTAATAACTCCTTCTCAGGGTGGGGATCCTCCTATCCCACTCGGATGAATTCTTCTAGTCTTTCAGATTTTTCTGGCTCATTTAACGAATCAGTGTATGGTGAGCGTTTGCAGATTGTTCCAGTGCAGAATAAAGGGTCCTTGAGAGTTTTGCTCCTCCATGGAAATTTAGATATATGGGTCCATGAAGCCAAGAATCTTCCAAATATGGACATGTTTCACAAAACTTTAGGTGATGTGTTTGGTAAATTGCCTGGTGGTGTGAGCAATAAAATTGAAGGAACTATGAATAAGAAGATTACTAGTGATCCTTATGTATCGATTTTAGTATCCAATGCTGTAATTGGGAGGACTTATGTCATTAGCAACTCTGAAAACCCTGTTTGGTGGCAACATTTCTATGTTCCTGTCGCACATCATGCTGCAGAAGTACACTTTCTTGTTAAAGACAGTGATATTGTGGGTTCACAGCTCATTGGCATTGTGGCAATTCCAGTGGAGCGAATATACTCAGGAGAAACAGTTGAAGGATTTTTCCCTATCCTGAATAATAATGGGAAGCCGTGTAAGCAAGATGCTGTCCTGAGGCTATCCATTCAGTACATACCTATGGAGAAACTGAGCATTTATCACAAAGGAGTTGGAGCAGGGCCTGAATACGTGGGGGTTCCTGGAACATATTTTCCTTTGAGGAAAGGTGGAACTGTTACTCTGTATCAAGATGCTCATGTTCCAGATGGAAGCCTCCCTAATGTGTTGCTTGACAGTGGGATGTACTATGCGCATGGAAAGTGTTGGCAAGATATCTTTGACGCCATAAGTCAAGCTCGGCGTTTGATTTATATTACAGGTTGGTCAGTGTGGCACAAAGTAAGGTTGATTAGGAATGCTGCTGGTTATTCTCCAGATTATACCTTGGGTGATCTTCTGAGGTCAAAATCACAGGAAGGAGTAAGAGTGCTTCTGCTTATCTGGGATGATCCTACATCAAGAAGCATTTTAGGTTATAAAACAGATGGTGTCATGGCAACTCATGATGAGGAAACTCGACGATTTTTCAAGCACACTTCAGTTCAAGTGCTTCTTTGTCCTCGCAGTGGTAAACGACATAGCTGGATCAAGCAAAAGGAAGTTGGAACGATATATACACATCATCAGAAAACTGTTATTGTGGATGCTGATGCTGGAAGTAATAGAAGAAAAGTGATAGCATTTGTTGGTGGACTTGATTTGTGTGACGGGCGATATGATACTCCCCACCACCCTATTTTTAGATCATTGAATACAGATCATAAGGATGACTACCACAACCCCACTTTCACGGGTAATGTTGGTGGTTGTCCTCGGGAGCCATGGCATGATTTGCATTCTAAAATTGATGGTCCAGCAGCTTATGATGTTTTAACTAACTTTGAGGAGCGCTGGTTAAAAGCTTCAAAACCTCACGGGATTAAAAAGTTGACTACTTCATACGATGATGCTTTGCTAAGGTTGGAAAGAATTCCAGATTTTATTGGCATCAATGATGCTCCAAGTGTTGGTGAAGATGATCCTGAAGTTTGGCATGTTCAGATATTTCGTTCAATTGATTCAAATTCGGTTAAGGGATTTCCGAAGGATCCAAAAAATGCAACAAGCAAGAATCTAGTATGTGGAAAGAATGTGCTGATTGACATGAGCATACATACAGCATATATTAAGGCCATTCGTGCTGCGCAACATTACATTTATATAGAGAATCAATATTTTATCGGCTCTTCATACAATTGGAGTCAACATAAAGACCTTGGTGCTGATAACTTAATCCCAATGGAAATTGCTCTAAAGATTACTGAAAAGATAAAAGCACATGAAAGATTTGCAGTGTATATTGTTATTCCCATGTGGCCGGAAGGAGTTCCAACAGGGGCTGCAACGCAAAGGATTCTATTTTGGCAGAATAAAACAATGCAAATGATGTATGAGACCATTTACAAGGCTTTGGTTGAAGCAGGGCTTGAAGCAGCATTTTCTCCTCAAGATTATTTGAACTTTTTCTGTCTTGGTAATCGAGAGGCCATCAGTATGTATGATGATGTTGGTGTGACAGGATCTCCTCCCCCAGCAAATAGTCCTCAAGTGGCTAGCCGAAATAGCCGACGTTTCATGATTTATGTTCACTCAAAAGGCATGATAGTTGATGATGAATATGTGATATTGGGGTCTGCAAACATCAACCAGCGCTCCATGGAAGGAACAAGGGACAGTGAGATTGCAATGGGCGCCTATCAACCTCATTATACATGGGCAAAAGCACAAACTTATCCACACGGTCAAATCCATGGATATAGGATGTCCCTTTGGGCAGAACATACAGGAACAATTGAGGACTGCTTCTTGCAACCTGAGAGTCTTGAATGTGTAAGTAGGATTAGAGCAATGGGAGAAATGAACTGGAAACAATTTGCAGCAGATGAAGTAACAGAGATGAGAGGGCATCTACTGAAATACCCTGTAGAAGTTGATAGAAAGGGCAAGGTTAGATCACTTCCAGACCAAGAAGAGTTCCCTGATGTGGGAGGAAAAATAGTTGGATCTTTTCTTGCCATGAAGGAGAATCTAACCATTTGA 3303 0.4229 MDNYGSSSPYRYPIPYGYPPNPHQPYPPPPVSAPDPYAQAPYPSYPYLSSHSFNYSHHGPPRPSSHSGHFEYSYPPNAMDFSHPPPPSYAPPPTYPYPYHVPPPNHGSPGPPPFHQPSYQYGSPQYHYPPKESYSPPPDIHSGTNSFSSPYWQDDTSTAEGGKVSQSSDNSISMHSQGSSYPALDDLMSNVRLSDGQPTAPASPPAPAGHPLMHSISVPKLQQKKEEFYGYSNNSFSGWGSSYPTRMNSSSLSDFSGSFNESVYGERLQIVPVQNKGSLRVLLLHGNLDIWVHEAKNLPNMDMFHKTLGDVFGKLPGGVSNKIEGTMNKKITSDPYVSILVSNAVIGRTYVISNSENPVWWQHFYVPVAHHAAEVHFLVKDSDIVGSQLIGIVAIPVERIYSGETVEGFFPILNNNGKPCKQDAVLRLSIQYIPMEKLSIYHKGVGAGPEYVGVPGTYFPLRKGGTVTLYQDAHVPDGSLPNVLLDSGMYYAHGKCWQDIFDAISQARRLIYITGWSVWHKVRLIRNAAGYSPDYTLGDLLRSKSQEGVRVLLLIWDDPTSRSILGYKTDGVMATHDEETRRFFKHTSVQVLLCPRSGKRHSWIKQKEVGTIYTHHQKTVIVDADAGSNRRKVIAFVGGLDLCDGRYDTPHHPIFRSLNTDHKDDYHNPTFTGNVGGCPREPWHDLHSKIDGPAAYDVLTNFEERWLKASKPHGIKKLTTSYDDALLRLERIPDFIGINDAPSVGEDDPEVWHVQIFRSIDSNSVKGFPKDPKNATSKNLVCGKNVLIDMSIHTAYIKAIRAAQHYIYIENQYFIGSSYNWSQHKDLGADNLIPMEIALKITEKIKAHERFAVYIVIPMWPEGVPTGAATQRILFWQNKTMQMMYETIYKALVEAGLEAAFSPQDYLNFFCLGNREAISMYDDVGVTGSPPPANSPQVASRNSRRFMIYVHSKGMIVDDEYVILGSANINQRSMEGTRDSEIAMGAYQPHYTWAKAQTYPHGQIHGYRMSLWAEHTGTIEDCFLQPESLECVSRIRAMGEMNWKQFAADEVTEMRGHLLKYPVEVDRKGKVRSLPDQEEFPDVGGKIVGSFLAMKENLTI* 1101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g1279 1100 PANTHER PHOSPHOLIPASE D 189 1100 IPR015679 -
Vra4g1279 1100 PANTHER PHOSPHOLIPASE D ALPHA 1 189 1100 - -
Vra4g1279 1100 SMART pld_4 611 646 IPR001736 GO:0003824
Vra4g1279 1100 SMART pld_4 946 973 IPR001736 GO:0003824
Vra4g1279 1100 CDD C2_plant_PLD 281 433 - -
Vra4g1279 1100 MobiDBLite consensus disorder prediction 56 213 - -
Vra4g1279 1100 Pfam C2 domain 286 412 IPR000008 -
Vra4g1279 1100 SUPERFAMILY Phospholipase D/nuclease 777 1032 - -
Vra4g1279 1100 Pfam Phospholipase D C terminal 1020 1090 IPR024632 -
Vra4g1279 1100 Gene3D Endonuclease Chain A 487 726 - -
Vra4g1279 1100 SUPERFAMILY Phospholipase D/nuclease 496 711 - -
Vra4g1279 1100 Gene3D Endonuclease Chain A 758 1000 - -
Vra4g1279 1100 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 946 973 IPR001736 GO:0003824
Vra4g1279 1100 Pfam Phospholipase D Active site motif 612 646 IPR001736 GO:0003824
Vra4g1279 1100 Pfam Phospholipase D Active site motif 947 973 IPR001736 GO:0003824
Vra4g1279 1100 MobiDBLite consensus disorder prediction 79 118 - -
Vra4g1279 1100 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 284 435 IPR035892 -
Vra4g1279 1100 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 611 646 IPR001736 GO:0003824
Vra4g1279 1100 ProSiteProfiles C2 domain profile. 264 410 IPR000008 -
Vra4g1279 1100 MobiDBLite consensus disorder prediction 138 184 - -
Vra4g1279 1100 Gene3D C2 domain 281 426 IPR035892 -
Vra4g1279 1100 SMART C2_3c 287 409 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g1279 Vra-Chr4 19683840 19691946 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g1279 65 1100 Phospholipase D Gene Family (Wang group) AT2G42010 68.638 0.0 1461
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g1279 K01115 - gmx:100791059 1871.29