Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g1273 ATGGTGAACGTGATGGAGTGGCAGAAGCAGAGTTGGCAACCCAACGGTAACGCCGAAATGATGTACGTCAAAGTCATGACCGACGAACAACTCGAGACTCTCCGCAAGCAGATTGCGGTTTACGCAACAATCTGCGAGCAACTCATCGAGATGCACAAAACCATCTCTTCTCACCAAGATCTCGCAGGGATTAGACTGGGAAACATGTACTGCGATCCTTTGTTGGGGTCTAGTGGGCACAAAATAGCTTCGAGGCAGAGGTGGACTCCGACTGCTATGCAGCTTCAGATTCTGGAGCGGATATTTGATCAGGGAACTGGGACTCCCAGCAAGGAAAAGATTAAGGAGATCACTGCTGAGCTCAGCCAGCATGGCCAGATTTCTGAGACCAATGTTTATAACTGGTTTCAGAATAGGCGGGCTCGCTCCAAAAGAAAGCAACAGAATGTGGCACCCGGTGTTAATGCGGAATCGGAAGTAGAGACCGAGGTTGATTCCAAAGATAAGAAGACAAAGGCAGACGATTTTTGGTCCCAGCTCAATGTTTCTGCTGGGCCTTCTGATAATTTAGGTTTTCAGAACCATGATGATCTGCCGTACTTGAATGAGAATTCAGATTCAAACAAACCAGATTCTGTTTTCCCGTCTGATGGGAGTTTAAGATCCACTAGAAATTTCAACCATGTGCCTGTTTTCGATGGGCTGCTATCGAACCCCGGGAATGGTTATCTTACTGGAAAAATAGAAGCTCCTGAGAACTACGACTTATACCAGCCATCAGACGACTTCGACATGGCAGGCTGA 804 0.4726 MVNVMEWQKQSWQPNGNAEMMYVKVMTDEQLETLRKQIAVYATICEQLIEMHKTISSHQDLAGIRLGNMYCDPLLGSSGHKIASRQRWTPTAMQLQILERIFDQGTGTPSKEKIKEITAELSQHGQISETNVYNWFQNRRARSKRKQQNVAPGVNAESEVETEVDSKDKKTKADDFWSQLNVSAGPSDNLGFQNHDDLPYLNENSDSNKPDSVFPSDGSLRSTRNFNHVPVFDGLLSNPGNGYLTGKIEAPENYDLYQPSDDFDMAG* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g1273 267 Pfam Homeodomain 85 145 IPR001356 GO:0003677
Vra4g1273 267 SUPERFAMILY Homeodomain-like 83 148 IPR009057 -
Vra4g1273 267 MobiDBLite consensus disorder prediction 184 219 - -
Vra4g1273 267 MobiDBLite consensus disorder prediction 143 172 - -
Vra4g1273 267 SMART HOX_1 83 150 IPR001356 GO:0003677
Vra4g1273 267 PANTHER - 3 266 - -
Vra4g1273 267 MobiDBLite consensus disorder prediction 198 219 - -
Vra4g1273 267 ProSiteProfiles 'Homeobox' domain profile. 81 146 IPR001356 GO:0003677
Vra4g1273 267 CDD homeodomain 85 147 IPR001356 GO:0003677
Vra4g1273 267 PANTHER WUSCHEL-RELATED HOMEOBOX 13 3 266 IPR044559 GO:0003700
Vra4g1273 267 Gene3D - 86 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g1273 Vra-Chr4 19633625 19636685 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g1273 21 267 Wox Gene Family AT4G35550 53.414 8.98e-80 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vra4g1273 Homeodomain 4e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g1273 - - gmx:100784355 469.929