Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g1265 ATGGCAATGTATAGAATTGCAATTGGGTCCCCTGCAGAGGCTGCCCAACCTGATGCAATTAGAGCAGCATTTGCAGAATTTTTCTCCATGATCATTTTTGTTTTTGTTGGAGAAGGATCTGGCATGGCTTACAGCAAGCTTACTGACAATGGACCTGCAACACCTACTGGTCTAATACTTGCATCACTGTCTCATGCATTTGGGCTTTTTGTGGCTGTTTCTGTTGGGGCAGTCCATTCTGGTGGTCATGTGAACCCTGCAGTCACATTTGGTGCCTTTATAGGAGGAAACATAACCCTGCTGAGAAGTATTCTGTATTGGATTGCACAGTTACTTGGTTCAGTTGTTGCATGCATTCTTCTCAAGTCTGCAACTGGTGGAATGGAAACATCAGGCTTTTCTCTATCCCCTGGTGTGTCTGTGTGGAATGCATTGATTTTTGAAGTTGTGATGACTTTTGGTTTGGTATACACAGTTTATGCAACAGCAGTGGATCCAAAGAAAGGGAATGTGGGAATTGTTGCCCCTATTGCAATTGGTTTGATTGTGGGTGCCAATATCTTAGTTGGTGGTGCTTTTGATGGTGCATCAATGAACCCAGCTGTGTCCTTTGGCCCTGCTGTGGTTACCTGGCAATGGACTCATCATTGGGTCTATTGGGCTGGACCATTCATTGGTGCAGCCATTGCTGCAATTATCTATGATAACATCTTCATTGGTGATGATGGTCATGAACCTCTTTCAAGCAGTGACTTCTAG 759 0.4427 MAMYRIAIGSPAEAAQPDAIRAAFAEFFSMIIFVFVGEGSGMAYSKLTDNGPATPTGLILASLSHAFGLFVAVSVGAVHSGGHVNPAVTFGAFIGGNITLLRSILYWIAQLLGSVVACILLKSATGGMETSGFSLSPGVSVWNALIFEVVMTFGLVYTVYATAVDPKKGNVGIVAPIAIGLIVGANILVGGAFDGASMNPAVSFGPAVVTWQWTHHWVYWAGPFIGAAIAAIIYDNIFIGDDGHEPLSSSDF* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g1265 252 Pfam Major intrinsic protein 15 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra4g1265 252 CDD MIP 21 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra4g1265 252 PANTHER MAJOR INTRINSIC PROTEIN-RELATED 1 252 - -
Vra4g1265 252 PANTHER AQUAPORIN-8 1 252 IPR034294 -
Vra4g1265 252 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra4g1265 252 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra4g1265 252 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra4g1265 252 PRINTS Major intrinsic protein family signature 147 165 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra4g1265 252 PRINTS Major intrinsic protein family signature 180 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra4g1265 252 PRINTS Major intrinsic protein family signature 217 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra4g1265 252 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Vra4g1265 252 Gene3D Glycerol uptake facilitator protein. 4 252 IPR023271 -
Vra4g1265 252 SUPERFAMILY Aquaporin-like 15 240 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g1265 Vra-Chr4 19573189 19575343 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g1265 1 252 Major Intrinsic Protein MIP AT4G01470 81.746 7.10e-150 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g1265 K09873 - gmx:100788583 452.981