Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g1262 ATGGCTCTTCCAAGACCAAGTACTGAAGAGAAAGCCCTTTCTCAGCTCAAAGAAGGAACAGCATCATCTTCAGCAGCACCACCTTCTTCATCTTCTTCATGGAATAATAGCCTTCACAATTTCTCTCCTTTGAATCTACACCACAAGACTAGCAAAATTGAAGACAGTGATGAAGATATGTTCACAGTTCCAGATGTGGAGATCACAGCCATTAATGTTCATTCTCAACCAAACAGTAACCTTAAACAATCTAACGTGACAGAACCTCAGTTTCAAACTGGTTTTCCTGGAAAGCGTCGCAGGGGAAGAAACCCTGCGGATAAGGAACATAGACGTCTCAAGAGGTTATTGCGAAATAGAGTTTCCGCTCAACAAGCTCGAGAAAGAAAGAAGGTTTATGTGAATGATTTGGAAGCAAGAGCCAAAGAGTTACAAGATAAAAATGCTATCTTAGAAGAACGTATCTCTACTTTGATCAATGAGAACACCATGCTTAGGAAGGTTCTTATGAATGCGAGGCCAAAAGTTGATGATAGCAATGAACAAAAGCAAGAACAGTTAAGTAAGAGCTAA 573 0.4014 MALPRPSTEEKALSQLKEGTASSSAAPPSSSSSWNNSLHNFSPLNLHHKTSKIEDSDEDMFTVPDVEITAINVHSQPNSNLKQSNVTEPQFQTGFPGKRRRGRNPADKEHRRLKRLLRNRVSAQQARERKKVYVNDLEARAKELQDKNAILEERISTLINENTMLRKVLMNARPKVDDSNEQKQEQLSKS* 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g1262 190 MobiDBLite consensus disorder prediction 76 92 - -
Vra4g1262 190 SMART brlzneu 107 171 IPR004827 GO:0003700|GO:0006355
Vra4g1262 190 MobiDBLite consensus disorder prediction 13 42 - -
Vra4g1262 190 Gene3D Single helix bin 130 171 - -
Vra4g1262 190 MobiDBLite consensus disorder prediction 76 109 - -
Vra4g1262 190 MobiDBLite consensus disorder prediction 1 42 - -
Vra4g1262 190 Pfam bZIP transcription factor 108 167 IPR004827 GO:0003700|GO:0006355
Vra4g1262 190 PANTHER TRANSCRIPTION FACTOR HY5-LIKE 22 190 - -
Vra4g1262 190 CDD bZIP_HY5-like 121 162 - -
Vra4g1262 190 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 114 129 IPR004827 GO:0003700|GO:0006355
Vra4g1262 190 Coils Coil 127 161 - -
Vra4g1262 190 SUPERFAMILY Leucine zipper domain 111 170 IPR046347 GO:0003700|GO:0006355
Vra4g1262 190 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 109 172 IPR004827 GO:0003700|GO:0006355
Vra4g1262 190 PANTHER TRANSCRIPTIONAL ACTIVATOR HAC1 22 190 IPR044280 GO:0000981|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g1262 Vra-Chr4 19550873 19555055 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g1262 90 178 Basic region leucine zipper (bZIP) Transcription Factor Gene Family AT3G17609 75.556 3.74e-41 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vra4g1262 bZIP_1 3.6e-11 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g1262 K16241 - gmx:778143 293.123