Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g1260 ATGGTGGGGAACGACGACGCGGGTCACCTTTCCGCCTCCCGGAAAATGTTCTGGCGGTCGGCGTCGTGGTCATCTTCCCGGACCGCCGCCGGGAACGCCTCTACCGGCGAGGCGGGTAAGGGTTTCGCAGATTCTGGCAGCGCAGAAGGTCCTCACAGAGAGAACCGGCGGTTCCCTCCGCCGCCACTTACGCCTCGGTCGCAGCAGAATTGTAAGGCGCGGTCTTGCTTGCCGCCGCTGCAGCCGCTGTCTATCGCTAGGCGGAGTCTTGATGAGTGGCCGAAGGCGGGCTCCGATGACATCGGCGAGTGGCCGCAGCCGCCCACCACCCCGGGAGGGAGAGGTAATGGTAGCAATGGTGAAAGGTTGAAACTTGATTTGTCTTCCATTCAGCATAGCAACCCTGATCATAGTAGGAGTAACAATGGTGGGCTTGTGAAGAGGGATAAGATTGCATTTTTTGACAAGGAGTGTTCAAAAGTTGCTGATCATGTGTACCTTGGTGGTGATGCTGTTGCTAGGGATAGAGACATTTTGAAGCATAATGGTATCACTCATGTGTTGAATTGTGTGGGGTTTGTGTGTCCTGAATACTTTAAGGCTGATTTTGTGTATAGGACTTTGTGGCTGCAGGATAGTCCCTCCGAGGACATTACTAGTATCTTGTATGATGTGTTTGACTACTTTGAGGATGTTAGGGAACAAGGTGGGAGGGTGTTTGTGCACTGTTGTCAAGGGGTGTCTCGGTCTACATCTCTGGTGATTGCTTACCTTATGTGGAGGGAGGGACAAAGTTTTGATGATGCTTTTCAGTTTGTGAAGGCTGCAAGAGGGATTGCTGATCCGAATATGGGGTTCGCTTGCCAGTTGTTGCAGTGTCAGAAAAGGGTCCACGCGTTCCCTCTTAGTCCTAGCTCTTTGCTTAGGATTTACAGGATTGCTCCACACTCCCCGTATGATCCTTTACATCTTGTTCCCAAAATGTTGATGGATCCTTCGTCAGCTGCATTGGACTCCAGAGGCGCGTTTATTGTGCACATTCCTTCGGCAATATATGTTTGGATTGGTAAGAACTGTGAGGCCATCATGGAGAGGGACGCCAGAGGGGCTGTTGGCCAGATTGTTCGGTATGAGAAGGTGCAAGGGCCAATTGTGATGATTAAGGAAGGTGAGGAACCGGCTTACTTCTGGGATGCTTTTTCGAATTTTCTGCCTTTGATGGATAAATCTGGCAATAGAGTAGAAGATGGAAACTTGACTAGTAAAGTTTCTCCTGGTGAGAGGAGAGTGGAAGCATATGACGTTGATTATGAAGTTTTCAAAAAAGCAATCACAGGAGGATTTGTGCCTCCCTTTGCGTCATCGGAGAATGAACATGAAACCCATCTGCCTGCAAGAGAGAGTAGTTGGAGTGCTTTAAGGCGTAAAGTTGCCTCTGCTAATATGAAGGACTTTGTTTCTACCCCTAGGTTATCCTTTCCTAGGGTTTATTCAGATTCCATGTTGTGTATTCATACATCAGCAAACTTGTCTCCATCTTCATCCCTTTCATCATCGTCATCGTCTATATCATCATCCTCTTCACCGTCTTATGTTTCTCCAGATTCCATTTCTTCTGATTCTAGTACTCATTCTAAGTTTTTGTCAGAAGTGTCCCCAGATTCTTCCTCTGTGGTTTTTACTCCTATTCCCGTATCTTCTTCTTTGTCCAGTTTTTCTAATTTGTCAATCTCTTCAAATTCTACTTCTAAAGCAGTTTCTAACAGTACAGATATCCTTGGTGTCAAGTTATCACATCCCTGGTCTCAGTCAGCCTCTTTACCATTGAAGAAACCATCAACTTCCCTTGCTGAACGAAGAGGTAGTCTGTCAAAATCTTTGAAGTTGCCACTGAAGAATGATAAGAAACAAGTAATGGATAAGCCACCTACCTTTCATAATAGTCAAGAATATGACATTATTGTCAATGGCAATGTTAGCTATTTGCAACAATCAGACAGTAAAGATGATTTTTGTGAGTCTAACAAGCATGCCAAGGAGGGAGTTGTGAATTCATTTCAAAAGTGTGAGCTGGCACTATGTCCAAGCATTGTTGACAGCACGCACCTCAAGGAATCATCACTTGTTCGGAACTCTTTTGAGCCTTTGATAGATAGTTCCTCAGTAGAAGACGCGGTGCTTGGTCAGTCTGCAGCATTGAAGGGAGCCAATGAGAGTGGCTTGGCGCAGTTTAATGTCGCACAGACTTCGGTATATCACTGGCCCAGTTTAGAAAAGGTTGAGACATTTGGTACAGATCATTTGGATTCTAAAGCTGCTTTTGTCATATTCTCTCCCAGTATGCACTTAAACGCAGGGAACATGCTATATATTTGGGTAGGGAAGTCTTTCAATTGTGACGCTTCACAGGTTCACTTGGATGTTGATATACAGTTAGATTGTTTAGGAGCTGTTGACTGGAATCAAATTGGTTGTGATCTCCTTGATCGGTTTAGTTTGCCGAAGAGTACAGTCATCAAGATTGTTAAAGAGAATGAGGAACCTTCAGAGTTCCTTGCTTTGCTCAGTTCATTGTAG 2577 0.4563 MVGNDDAGHLSASRKMFWRSASWSSSRTAAGNASTGEAGKGFADSGSAEGPHRENRRFPPPPLTPRSQQNCKARSCLPPLQPLSIARRSLDEWPKAGSDDIGEWPQPPTTPGGRGNGSNGERLKLDLSSIQHSNPDHSRSNNGGLVKRDKIAFFDKECSKVADHVYLGGDAVARDRDILKHNGITHVLNCVGFVCPEYFKADFVYRTLWLQDSPSEDITSILYDVFDYFEDVREQGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFDDAFQFVKAARGIADPNMGFACQLLQCQKRVHAFPLSPSSLLRIYRIAPHSPYDPLHLVPKMLMDPSSAALDSRGAFIVHIPSAIYVWIGKNCEAIMERDARGAVGQIVRYEKVQGPIVMIKEGEEPAYFWDAFSNFLPLMDKSGNRVEDGNLTSKVSPGERRVEAYDVDYEVFKKAITGGFVPPFASSENEHETHLPARESSWSALRRKVASANMKDFVSTPRLSFPRVYSDSMLCIHTSANLSPSSSLSSSSSSISSSSSPSYVSPDSISSDSSTHSKFLSEVSPDSSSVVFTPIPVSSSLSSFSNLSISSNSTSKAVSNSTDILGVKLSHPWSQSASLPLKKPSTSLAERRGSLSKSLKLPLKNDKKQVMDKPPTFHNSQEYDIIVNGNVSYLQQSDSKDDFCESNKHAKEGVVNSFQKCELALCPSIVDSTHLKESSLVRNSFEPLIDSSSVEDAVLGQSAALKGANESGLAQFNVAQTSVYHWPSLEKVETFGTDHLDSKAAFVIFSPSMHLNAGNMLYIWVGKSFNCDASQVHLDVDIQLDCLGAVDWNQIGCDLLDRFSLPKSTVIKIVKENEEPSEFLALLSSL* 859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g1260 858 MobiDBLite consensus disorder prediction 18 33 - -
Vra4g1260 858 Pfam Dual specificity phosphatase, catalytic domain 165 295 IPR000340 GO:0008138|GO:0016311
Vra4g1260 858 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 151 298 IPR029021 -
Vra4g1260 858 SUPERFAMILY Actin depolymerizing proteins 306 411 - -
Vra4g1260 858 PANTHER PROTEIN-TYROSINE-PHOSPHATASE MKP1 1 852 - -
Vra4g1260 858 PANTHER MKPA PROTEIN 1 852 - -
Vra4g1260 858 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 216 277 IPR000387 GO:0016311|GO:0016791
Vra4g1260 858 ProSiteProfiles Dual specificity protein phosphatase domain profile. 157 299 IPR020422 GO:0006470|GO:0008138
Vra4g1260 858 MobiDBLite consensus disorder prediction 510 537 - -
Vra4g1260 858 SMART dsp_5 157 296 IPR020422 GO:0006470|GO:0008138
Vra4g1260 858 MobiDBLite consensus disorder prediction 94 122 - -
Vra4g1260 858 Gene3D Protein tyrosine phosphatase superfamily 133 299 IPR029021 -
Vra4g1260 858 SUPERFAMILY Actin depolymerizing proteins 760 856 - -
Vra4g1260 858 MobiDBLite consensus disorder prediction 18 78 - -
Vra4g1260 858 CDD DSP 158 292 - -
Vra4g1260 858 ProSitePatterns Tyrosine specific protein phosphatases active site. 241 251 IPR016130 GO:0016311|GO:0016791
Vra4g1260 858 Gene3D Severin 320 404 IPR029006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g1260 Vra-Chr4 19538522 19542928 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g1260 2 193 Protein tyrosine phosphatase (PTP) family AT3G55270 61.979 6.80e-66 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g1260 - - gmx:100790177 1338.55