Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g1256 ATGGAGATAAGCTACGCATCGCCAAGTTTCTACGACCTCCCCGCCGCCGCCGCTGCTTCTACCATGCCGTCCTCCGCGACCGGAGCACGTCCTGTAAGGATTATTCCTCTTCAGCATCCGACCGCCACCTCGTCCTCGTCTCCGCCGGCGAACGTCGCCTTCGCGCGGTGGACCGCGAAGCTCAGGCGGATGACGTGGCTCGAGTGGCTCGAGTTCTTCTTCCCTTGCCTACGCTGGATTCGCATCTATAAATGGCGCGAGTATTTCCAGGTCGATCTCATGGCCGGAATCACCGTCGGTGTCATGCTCGTTCCTCAGTCGATGTCGTATGCAAAATTGGCTGGACTTGAACCGATATATGGACTCTACTCTGGTTTTGTGCCTATATTTGTGTATGCCATATTCGGGTCTTCCCGCCAGCTTGCAGTAGGCCCAGTGGCATTGGTTTCCCTCTTGGTATCTAACGTGCTAAGTGGCATAGCTGACTCGTCCAGTGAATTATACACAGAGCTTGCAATATTACTGTCCCTTATGGTGGGGATACTGGAGTGTATAATGGGACTATTGAGGCTTGGATGGCTTATTCGTTTCATTAGCCATTCAGTGATTTCTGGCTTTACAACTTCTTCCGCTATTGTCATTGGTTTATCTCAAGCTAAGTACTTCTTGGGGTATGATGTAGACGGAAGTAGCAAGATCATTCCAGTAGTTAAGAGTATAATAGATGGAGCAGATAAGTTTTCATGGCCACCTTTTGTGATGGGATCCATTATGCTTGCGATACTACTTGTCATGAAACATCTGGGAAAATCAAGGAAGTACTTGCGATTCTTGAGAGCTGCTGGTCCTCTTACAGCAGTAGTTCTGGGAACAATTTTTGCAAAAGTTTTTCATCCACCGTCAATTTCTTTGGTGGGAGATATACCTCAAGGCTTACCAAAATTTTCTGTTCCAAAAGCTTTTGAGTATGCACAGTCCTTAATTCCAACTGCTATTCTCATAACCGGTGTGGCTATACTGGAATCAGTGGGAATTGCCAAGGCATTAGCAGCGAAGAATGGGTATGAGTTGGATTCAAATCAAGAGTTGTTTGGTCTTGGAGTTTCCAATGTTCTTGGTTCATTCTTTTCAGCATACCCCACCACAGGATCCTTTTCAAGGTCAGCTGTAAATCATGAGAGTGGTGCAAAATCTGGGGTATCTGGGATTGTTTCAGGAATTATAATGATCTGTGCACTTATGTTTCTTACACCATTGTTTGAGTACATACCTCAGTGTACCCTTGCTGCTATTGTGATCTCTGCTGTGATAGGTCTGGTAGACTACGAGGAGGCCATTTTTTTGTGGCGTGTTGATAAGAAAGATTTTATTCTTTGGACCATTACTAGTACTACAACATTGTTCCTTGGTATTGAGATCGGTGTCCTTGTTGGGGTTGGGGTTTCACTTGCTTTTGTCATTCATGAGTCAGCAAATCCACATATCGCTGTTTTGGGTCGTTTGCCAGGAACAACTGTTTATAGGAATGTTAAACAGTATCCTGAAGCATATAAATATAATGGAATTGTAATTGTTCGTGTTGATGCTCCAATTTATTTTGCAAACACGAGTTTCATAAAGGACAGGTTGCGTGAATATGAAGTTCATGTTGATAGTTCTAAAAGCCGTGGACCTGAGGTTGAAAGAATTTATTTTGTGATTCTTGAGATGGCACCTGTGACCTACATAGACTCTAGTGCTGTTCAAGCTTTGAAAGACTTATATCAGGAGTACAAATTACGGGACGTTCAGATTGCAATATCCAATCCAAACCCAGAAGTTCTGCTCACCCTGTCAAAATCCGGTCTGGTGGAGTTGATAGGTAAAGAATGGTACTTTGTGAGAGTACATGATGCTGTTCAAGTTTGCTTGCAACATGTTCAAAGCTTGAAAGCTGGATCTGACAGTTCACTCACGCCACTTTCTTCATTAGAAGACAAACCAAGTTTGTTTGCTCGATTGTCGAAAGAGAGAGCGGAGAAGTTTCCAGCTACCGACTTAGAATCTGGTAATGGCAGGCCTCCACTCCCCAAGGACATAGATTCCCAGTTGGAGCCATTGTTGTCCAAAGAACGTTGA 2118 0.4448 MEISYASPSFYDLPAAAAASTMPSSATGARPVRIIPLQHPTATSSSSPPANVAFARWTAKLRRMTWLEWLEFFFPCLRWIRIYKWREYFQVDLMAGITVGVMLVPQSMSYAKLAGLEPIYGLYSGFVPIFVYAIFGSSRQLAVGPVALVSLLVSNVLSGIADSSSELYTELAILLSLMVGILECIMGLLRLGWLIRFISHSVISGFTTSSAIVIGLSQAKYFLGYDVDGSSKIIPVVKSIIDGADKFSWPPFVMGSIMLAILLVMKHLGKSRKYLRFLRAAGPLTAVVLGTIFAKVFHPPSISLVGDIPQGLPKFSVPKAFEYAQSLIPTAILITGVAILESVGIAKALAAKNGYELDSNQELFGLGVSNVLGSFFSAYPTTGSFSRSAVNHESGAKSGVSGIVSGIIMICALMFLTPLFEYIPQCTLAAIVISAVIGLVDYEEAIFLWRVDKKDFILWTITSTTTLFLGIEIGVLVGVGVSLAFVIHESANPHIAVLGRLPGTTVYRNVKQYPEAYKYNGIVIVRVDAPIYFANTSFIKDRLREYEVHVDSSKSRGPEVERIYFVILEMAPVTYIDSSAVQALKDLYQEYKLRDVQIAISNPNPEVLLTLSKSGLVELIGKEWYFVRVHDAVQVCLQHVQSLKAGSDSSLTPLSSLEDKPSLFARLSKERAEKFPATDLESGNGRPPLPKDIDSQLEPLLSKER* 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g1256 705 ProSiteProfiles STAS domain profile. 512 636 IPR002645 -
Vra4g1256 705 Pfam Sulfate permease family 89 462 IPR011547 GO:0016021
Vra4g1256 705 TIGRFAM sulP: sulfate permease 75 632 IPR001902 GO:0015301|GO:0016020|GO:0055085
Vra4g1256 705 PANTHER SULFATE TRANSPORTER 4.1-RELATED 45 673 - -
Vra4g1256 705 ProSitePatterns SLC26A transporters signature. 118 139 IPR018045 GO:0008271|GO:0008272
Vra4g1256 705 SUPERFAMILY SpoIIaa-like 514 636 IPR036513 -
Vra4g1256 705 Pfam STAS domain 513 632 IPR002645 -
Vra4g1256 705 CDD STAS_SulP_like_sulfate_transporter 513 629 - -
Vra4g1256 705 Gene3D STAS domain 492 640 IPR036513 -
Vra4g1256 705 PANTHER SULFATE TRANSPORTER 45 673 IPR001902 GO:0015301|GO:0016020|GO:0055085
Vra4g1256 705 MobiDBLite consensus disorder prediction 674 705 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g1256 Vra-Chr4 19485084 19493334 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g1256 3 666 Inorganic Solute Cotransporters AT5G13550 72.404 0.0 981
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g1256 K18059 - gmx:100794754 1211.82