Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g1255 ATGGCTTCTTCACTCCCTCGGAGAAGAACTCACGCTCCCAAATCATCTTCCACCCTAATCGACGACGTTTTCTGCCAGGAATGCGGCTCCGGCCACTCTCCGGCGAAGTTGCTTCTCTGCGACAAATGCGATCGAGGTTACCACCTCTTCTGCCTCCGCCCCATCCTCACTTCCGTTCCCAAAGGCTCCTGGTTCTGTGGTTCCTGCTCCAACCACAAGCCTAAGTCTTTTCCCCTCGTGCAGACCAAAATAATCGATTTCTTTCGAATTCAACGCTCTCCCGAGACACGGTTGAATCAAGATACGCCGAAGAAGCGAAAGCGAGGTGGGAGCTTGGTGATGTTGAAGAAGAAACGGAAACTGTTGCCATTCGTGCCGAGTGAGGATACAAATAGGAGGTTGGAGCAGATGGCATCACTGGCAACGGCATTGACGACAACTAATGCAGAGTTCAGTAATAAGCTTACTTACATGCCTGGAATGGCACCTAGGTCTGCCAATTGCCCTGCTCTCGAGCGTGGTGGAATGCAGGTATTGTCAAAGGAAGATACCGAGACATTAAATTTGTGCAAAAGTATGATGGAACGAGGAGAATGGCCACCTCTCATGGTTGTTTTTGATCCTTTAGAAGGTTTTACAGTTGAAGCAGATAGACCCATCAAAGATTTAACCATAATTACAGAATATGTTGGAGATGTAGATTTTTTAAAGAATAGGGAAAATGATGATGGAGATAGCATAATGACACTTCTTTCAGCTTCTGATCCTTCAAAGACACTTGTGATCTGTCCAGACAAACGTAGCAATATAGCTCGTTTCATTAATGGCATCAATAACCATACACCGGAAGGGAAAAAGAAACAAAACTTGAAATGCGTGAGATTTGATGTTGGAGGCGAATGTCGAGTTCTTTTAGTTTCCAATAGAGATATCTCAAAGGGGGAAAGGTTGTACTATGACTACAATGGAGATGAACATGAGTATCCAACTGACCATTTTGTCTGA 1005 0.4498 MASSLPRRRTHAPKSSSTLIDDVFCQECGSGHSPAKLLLCDKCDRGYHLFCLRPILTSVPKGSWFCGSCSNHKPKSFPLVQTKIIDFFRIQRSPETRLNQDTPKKRKRGGSLVMLKKKRKLLPFVPSEDTNRRLEQMASLATALTTTNAEFSNKLTYMPGMAPRSANCPALERGGMQVLSKEDTETLNLCKSMMERGEWPPLMVVFDPLEGFTVEADRPIKDLTIITEYVGDVDFLKNRENDDGDSIMTLLSASDPSKTLVICPDKRSNIARFINGINNHTPEGKKKQNLKCVRFDVGGECRVLLVSNRDISKGERLYYDYNGDEHEYPTDHFV* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g1255 334 SUPERFAMILY FYVE/PHD zinc finger 15 76 IPR011011 -
Vra4g1255 334 CDD SET_ATXR5_6-like 197 334 - -
Vra4g1255 334 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 84 IPR013083 -
Vra4g1255 334 CDD PHD_RSF1 25 69 - -
Vra4g1255 334 Gene3D SET domain 106 334 IPR046341 -
Vra4g1255 334 ProSiteProfiles SET domain profile. 200 322 IPR001214 GO:0005515
Vra4g1255 334 PANTHER HISTONE ACETYLTRANSFERASE 7 331 - -
Vra4g1255 334 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR6 7 331 - -
Vra4g1255 334 SMART PHD_3 24 70 IPR001965 -
Vra4g1255 334 Pfam PHD-finger 24 71 IPR019787 -
Vra4g1255 334 ProSitePatterns Zinc finger PHD-type signature. 25 69 IPR019786 -
Vra4g1255 334 ProSiteProfiles Zinc finger PHD-type profile. 22 72 IPR019787 -
Vra4g1255 334 SUPERFAMILY SET domain 192 325 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g1255 Vra-Chr4 19481906 19484312 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g1255 22 85 C2H2 Transcription Factor Family AT3G01460 32.836 2.03e-07 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vra4g1255 PHD 6.2e-11 CL0390