Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g1238 ATGGATTTTTCTTCTACTTCGATCTCTCACTTCAGAGTCTCTGCCAATTCGTTCCTCTCTCAATACGAACCGCTTGCTCTGCTTCTCGTTCCTCTGCTTTCTCTCCTTCTCGCTCACTCGCTTCACTCCTTCTTACGCCTCCTATCCGAGAACGGACTCAAAGCCACGCTCCTAGGGTTTATCATGAACGCTGTCAAATTGGTTCCTTGCGTGAAGGGATACATAGATGCCGAAAAACAGAAGGTTGTGGATAAGTTGCAATCTGATAGCAAATCTAAAAGAGAAGGTTGGAATACTGAGTTGCCAAGCGCAGGATTAGGGACGTCTGTCCTTGATAAAATGAGAGAGGAAAAAAATAATGATCCGGTCTGGCAAGGCAAATGCTCCGGTACAGTCTACATTGGAGGAAGTGAATCCGATGGACATTTTTCTGTGATAAACGAGGCATGTTCAATGTTTGCACATACCAATCCCCTGCATTTGGATGTATTCAAGAGTGTTGCACGCTTTGAAGCAGAAGTGGTTGCAATGACAGCGGCACTTCTTGGAAGTAAGGAAAATAGTTCTGGAGGACAAATATGTGGCAACATGACATCAGGCGGGACTGAAAGTATACTATTAGCCGTCAAAACATCTCGTGACTATATGAAATCTAAAAAGGGAATTACAAGACCTGAAATGATTATTCCCTTGTCTGGACACTCAGCATATGACAAGGCTGCACAGTATTTTAATATCAAACTATGGCGTGTACCAGTTGACAAGAATTTTCAAGCAGATGTGAAAGCGATTCGACGCCATATCAACAAAAATACCATCCTGATTGTTGGATCTGCTCCTGGGTTTCCTCATGGAATAATTGACCCCATCGAAGAACTTGGTCGTCTGGCATCAAGCTTTGGTATTTGCTTCCATGTGGATCTTTGCCTTGGTGGCTTTGTATTACCATTTGCTCGTGAGCTTGGGTACCCCATTCCACCTTTTGATTTCTCTGTTAAAGGAGTTTCTTCAATATCAGTGGATGTACATAAATATGGTTTAGCTCCCAAAGGAACAAGTATAGTTCTTTATAGAAACCATGAAATCAGAAAGCATCAATTTGTTGCCGTTACCGAGTGGTCTGGTGGGTTGTATGTGTCTCCAACCATAGCTGGAAGCAGGCCTGGAAGTCTAATTGCGGGTGCGTGGGCAGCAATGATTTCTCTAGGGAAAGAAGGTTACTTGAAAAATACAAAAGCAATTATGGAAGGGTCAATAAGAATACAGAAAGGCATAGAGGAGATTGCTGAGTTGTATATTGTTGGAAACCCTGACATGACAATCGTGGCTTTTGGTTCAGATGTTCTGGATATATTTGAAGTGAATGATGTTATGTCATCCAAAGGGTGGCATTTGAATGCATTACAGAGACCCAACAGCATCCATATATGTGTTACACTACAACATGTGCCAATTGTTGAAGACTTTCTGAATGATTTGAAGGAATCTGTGAAAACTGTGAAAGCAAATCCAGGTCCAATAAGTGGAGGCCTGGCACCTATATATGGCGCCGCAGGGAAGATGCCAGATAGAGGCATGGTCCAGGAATTGCTGGTAGATTATATGGACGGTACCTGCTAA 1620 0.4278 MDFSSTSISHFRVSANSFLSQYEPLALLLVPLLSLLLAHSLHSFLRLLSENGLKATLLGFIMNAVKLVPCVKGYIDAEKQKVVDKLQSDSKSKREGWNTELPSAGLGTSVLDKMREEKNNDPVWQGKCSGTVYIGGSESDGHFSVINEACSMFAHTNPLHLDVFKSVARFEAEVVAMTAALLGSKENSSGGQICGNMTSGGTESILLAVKTSRDYMKSKKGITRPEMIIPLSGHSAYDKAAQYFNIKLWRVPVDKNFQADVKAIRRHINKNTILIVGSAPGFPHGIIDPIEELGRLASSFGICFHVDLCLGGFVLPFARELGYPIPPFDFSVKGVSSISVDVHKYGLAPKGTSIVLYRNHEIRKHQFVAVTEWSGGLYVSPTIAGSRPGSLIAGAWAAMISLGKEGYLKNTKAIMEGSIRIQKGIEEIAELYIVGNPDMTIVAFGSDVLDIFEVNDVMSSKGWHLNALQRPNSIHICVTLQHVPIVEDFLNDLKESVKTVKANPGPISGGLAPIYGAAGKMPDRGMVQELLVDYMDGTC* 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g1238 539 Gene3D Aspartate Aminotransferase, domain 1 108 502 IPR015422 GO:0003824
Vra4g1238 539 Gene3D - 100 536 - -
Vra4g1238 539 PANTHER SPHINGOSINE-1-PHOSPHATE LYASE 1 19 539 - -
Vra4g1238 539 Gene3D - 136 403 IPR015421 GO:0003824
Vra4g1238 539 SUPERFAMILY PLP-dependent transferases 81 503 IPR015424 -
Vra4g1238 539 PANTHER - 19 539 - -
Vra4g1238 539 Pfam Pyridoxal-dependent decarboxylase conserved domain 167 444 IPR002129 GO:0016830|GO:0019752|GO:0030170
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g1238 Vra-Chr4 19356421 19362948 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g1238 155 497 Calmodulin-binding Proteins AT5G17330 25.833 7.44e-25 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g1238 K01634 - gmx:100794395 973.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g1238 4 19356421 19362948 Vra4g1238 4 19356421 19362948 ECH